Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_M04
(389 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 181 1e-46
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 181 1e-46
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 181 1e-46
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 181 1e-46
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 181 1e-46
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 181 1e-46
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 181 1e-46
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 181 1e-46
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 181 1e-46
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 175 9e-45
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 173 3e-44
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 97 3e-21
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 97 3e-21
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 75 1e-14
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 66 6e-12
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 61 2e-10
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 40 8e-04
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 40 8e-04
U42436-1|AAF99891.1| 305|Caenorhabditis elegans Hypothetical pr... 39 0.001
U41540-7|AAM54182.1| 930|Caenorhabditis elegans Hypothetical pr... 28 2.0
U41540-6|AAM54183.1| 934|Caenorhabditis elegans Hypothetical pr... 28 2.0
Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical pr... 28 2.7
AL110484-22|CAB54414.2| 305|Caenorhabditis elegans Hypothetical... 28 2.7
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ... 27 3.6
AF016418-1|AAK18902.1| 494|Caenorhabditis elegans Hypothetical ... 27 3.6
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 26 8.2
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 26 8.2
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 181 bits (441), Expect = 1e-46
Identities = 85/89 (95%), Positives = 86/89 (96%)
Frame = +3
Query: 12 VDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWSGGSIL 191
+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVW GGSIL
Sbjct: 288 IDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 347
Query: 192 ASLSTFLQMWISKQEYDESGPLIVHRKCF 278
ASLSTF QMWISKQEYDESGP IVHRKCF
Sbjct: 348 ASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 181 bits (441), Expect = 1e-46
Identities = 85/89 (95%), Positives = 86/89 (96%)
Frame = +3
Query: 12 VDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWSGGSIL 191
+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVW GGSIL
Sbjct: 288 IDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 347
Query: 192 ASLSTFLQMWISKQEYDESGPLIVHRKCF 278
ASLSTF QMWISKQEYDESGP IVHRKCF
Sbjct: 348 ASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 181 bits (441), Expect = 1e-46
Identities = 85/89 (95%), Positives = 86/89 (96%)
Frame = +3
Query: 12 VDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWSGGSIL 191
+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVW GGSIL
Sbjct: 288 IDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 347
Query: 192 ASLSTFLQMWISKQEYDESGPLIVHRKCF 278
ASLSTF QMWISKQEYDESGP IVHRKCF
Sbjct: 348 ASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 181 bits (441), Expect = 1e-46
Identities = 85/89 (95%), Positives = 86/89 (96%)
Frame = +3
Query: 12 VDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWSGGSIL 191
+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVW GGSIL
Sbjct: 288 IDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 347
Query: 192 ASLSTFLQMWISKQEYDESGPLIVHRKCF 278
ASLSTF QMWISKQEYDESGP IVHRKCF
Sbjct: 348 ASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 181 bits (441), Expect = 1e-46
Identities = 85/89 (95%), Positives = 86/89 (96%)
Frame = +3
Query: 12 VDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWSGGSIL 191
+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVW GGSIL
Sbjct: 288 IDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 347
Query: 192 ASLSTFLQMWISKQEYDESGPLIVHRKCF 278
ASLSTF QMWISKQEYDESGP IVHRKCF
Sbjct: 348 ASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 181 bits (441), Expect = 1e-46
Identities = 85/89 (95%), Positives = 86/89 (96%)
Frame = +3
Query: 12 VDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWSGGSIL 191
+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVW GGSIL
Sbjct: 288 IDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 347
Query: 192 ASLSTFLQMWISKQEYDESGPLIVHRKCF 278
ASLSTF QMWISKQEYDESGP IVHRKCF
Sbjct: 348 ASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 181 bits (441), Expect = 1e-46
Identities = 85/89 (95%), Positives = 86/89 (96%)
Frame = +3
Query: 12 VDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWSGGSIL 191
+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVW GGSIL
Sbjct: 244 IDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 303
Query: 192 ASLSTFLQMWISKQEYDESGPLIVHRKCF 278
ASLSTF QMWISKQEYDESGP IVHRKCF
Sbjct: 304 ASLSTFQQMWISKQEYDESGPSIVHRKCF 332
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 181 bits (441), Expect = 1e-46
Identities = 85/89 (95%), Positives = 86/89 (96%)
Frame = +3
Query: 12 VDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWSGGSIL 191
+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVW GGSIL
Sbjct: 274 IDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 333
Query: 192 ASLSTFLQMWISKQEYDESGPLIVHRKCF 278
ASLSTF QMWISKQEYDESGP IVHRKCF
Sbjct: 334 ASLSTFQQMWISKQEYDESGPSIVHRKCF 362
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 181 bits (441), Expect = 1e-46
Identities = 85/89 (95%), Positives = 86/89 (96%)
Frame = +3
Query: 12 VDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWSGGSIL 191
+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVW GGSIL
Sbjct: 288 IDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 347
Query: 192 ASLSTFLQMWISKQEYDESGPLIVHRKCF 278
ASLSTF QMWISKQEYDESGP IVHRKCF
Sbjct: 348 ASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 175 bits (426), Expect = 9e-45
Identities = 84/89 (94%), Positives = 85/89 (95%)
Frame = +3
Query: 12 VDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWSGGSIL 191
+DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP TMKIKIIAPPERKYSVW GGSIL
Sbjct: 288 IDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-TMKIKIIAPPERKYSVWIGGSIL 346
Query: 192 ASLSTFLQMWISKQEYDESGPLIVHRKCF 278
ASLSTF QMWISKQEYDESGP IVHRKCF
Sbjct: 347 ASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 173 bits (422), Expect = 3e-44
Identities = 82/89 (92%), Positives = 84/89 (94%)
Frame = +3
Query: 12 VDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWSGGSIL 191
VDIRKDLYANTVLSGGT+M+PGIADRMQKEI LAPSTMKIKIIAPPERKYSVW GGSIL
Sbjct: 287 VDIRKDLYANTVLSGGTSMFPGIADRMQKEIQHLAPSTMKIKIIAPPERKYSVWIGGSIL 346
Query: 192 ASLSTFLQMWISKQEYDESGPLIVHRKCF 278
ASLSTF QMWISKQEYDESGP IVHRKCF
Sbjct: 347 ASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 97.5 bits (232), Expect = 3e-21
Identities = 43/89 (48%), Positives = 62/89 (69%)
Frame = +3
Query: 12 VDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWSGGSIL 191
VD+R+ LY+N VLSGGTT++ G DR+ E+ +AP+ KI+I A ER W GGSI+
Sbjct: 286 VDLRQTLYSNIVLSGGTTLFKGFGDRLLGEMRKIAPADGKIRISASQERNSLTWIGGSIV 345
Query: 192 ASLSTFLQMWISKQEYDESGPLIVHRKCF 278
ASL TF +MW+ K+EY++ G +H++ F
Sbjct: 346 ASLDTFRKMWLGKKEYEDMGASAMHKRFF 374
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 97.5 bits (232), Expect = 3e-21
Identities = 43/91 (47%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
Frame = +3
Query: 12 VDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWSGG 182
+DIR L++N ++GG ++ G +R+ + P T+K+++ A P ERKY W GG
Sbjct: 345 IDIRPTLFSNVTVTGGNSLILGFTERLNYALATKCPPTIKLRVFAAPTQAERKYGAWIGG 404
Query: 183 SILASLSTFLQMWISKQEYDESGPLIVHRKC 275
SIL SL TF QMW+SK EYDESG IV +KC
Sbjct: 405 SILGSLGTFQQMWVSKAEYDESGKSIVEKKC 435
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 75.4 bits (177), Expect = 1e-14
Identities = 41/93 (44%), Positives = 56/93 (60%), Gaps = 13/93 (13%)
Frame = +3
Query: 12 VDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL-----------APSTMKIKIIAPPER 158
+D R D Y + VLSGGTTMYPG+ R++KE+ L A KI+I APP R
Sbjct: 291 IDTRLDFYKHIVLSGGTTMYPGLPSRLEKELKQLYLDRVLHGNTDAFQKFKIRIEAPPSR 350
Query: 159 KYSVWSGGSILASL--STFLQMWISKQEYDESG 251
K+ V+ GG++LA+L W+SK+EY+E G
Sbjct: 351 KHMVFLGGAVLANLMKDRDQDFWVSKKEYEEGG 383
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 66.5 bits (155), Expect = 6e-12
Identities = 36/99 (36%), Positives = 58/99 (58%), Gaps = 16/99 (16%)
Frame = +3
Query: 12 VDIRKDLYANTVLSGGTTMYPGIADRMQKEITALA----------------PSTMKIKII 143
+D+R+ LY N VLSGG+TM+ A ++Q+++ L+ P + +++I
Sbjct: 316 IDVRRGLYENIVLSGGSTMFKDFARKLQRDVKRLSDGRLQMSETLSGGRLKPKPIDVQVI 375
Query: 144 APPERKYSVWSGGSILASLSTFLQMWISKQEYDESGPLI 260
+ ++Y+VW GGS+LAS S F Q+ +K EY E GP I
Sbjct: 376 SHKMQRYAVWFGGSMLASTSEFYQVSHTKAEYMERGPSI 414
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 61.3 bits (142), Expect = 2e-10
Identities = 27/75 (36%), Positives = 48/75 (64%)
Frame = +3
Query: 12 VDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWSGGSIL 191
+D R+ LY N L+GG ++ PGIA+++++E++ + P+T+ ++ P R + + G I+
Sbjct: 465 IDSRRTLYRNIYLAGGASLMPGIAEKLEQELSTVVPNTIHTQVNISPWRYNAAYLGAQIV 524
Query: 192 ASLSTFLQMWISKQE 236
AS STF IS Q+
Sbjct: 525 ASASTFEDSCISLQQ 539
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 39.5 bits (88), Expect = 8e-04
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Frame = +3
Query: 18 IRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKI---IAPPERKYSVWSGGSI 188
+R L N ++ GG++ +PG +R+++E+ ++ P+ + + + P+ W G
Sbjct: 304 LRPALAENIIVIGGSSCFPGFRERLEREVRSMLPAEYGLNVSNDVINPQT--HSWHCGQE 361
Query: 189 LASLSTFLQMWISKQEYDESGPLIVHRKCF*ALCAS 296
L + S WI+++++DE G + F L S
Sbjct: 362 LLTASKV--PWINRKDWDERGDSLEFSNFFQTLVQS 395
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 39.5 bits (88), Expect = 8e-04
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Frame = +3
Query: 18 IRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKI---IAPPERKYSVWSGGSI 188
+R L N ++ GG++ +PG +R+++E+ ++ P+ + + + P+ W G
Sbjct: 304 LRPALAENIIVIGGSSCFPGFRERLEREVRSMLPAEYGLNVSNDVINPQT--HSWHCGQE 361
Query: 189 LASLSTFLQMWISKQEYDESGPLIVHRKCF*ALCAS 296
L + S WI+++++DE G + F L S
Sbjct: 362 LLTASKV--PWINRKDWDERGDSLEFSNFFQTLVQS 395
>U42436-1|AAF99891.1| 305|Caenorhabditis elegans Hypothetical
protein C49H3.8 protein.
Length = 305
Score = 38.7 bits (86), Expect = 0.001
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Frame = +3
Query: 12 VDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL-APSTMKIKIIAP----PERK----Y 164
+D+RK L+ N +L+GG + PG+ R+++EI + + KI +I E K +
Sbjct: 203 IDLRKKLFPNILLTGGVSTIPGLMKRLEQEIQVIDEKNNSKIAVIVKFYQFSEIKNTPLF 262
Query: 165 SVWSGGSILASL 200
W G S+L SL
Sbjct: 263 VSWLGASLLGSL 274
>U41540-7|AAM54182.1| 930|Caenorhabditis elegans Hypothetical
protein F35H12.2a protein.
Length = 930
Score = 28.3 bits (60), Expect = 2.0
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +2
Query: 104 HSPRSIHDEDQNHRATREEVFCMERWIDPRLPLY--LPADVDLETGI*RVRPLDCAQEVL 277
HS + + D+N T VF +E DPR+ ++ L + +T + +D +
Sbjct: 225 HSDLQLLEMDRNATGTDSAVFVIEANWDPRVHMFEVLNTETPRDTRVFMTVAIDVIVSEI 284
Query: 278 LSAVRIAASSSPRFGRSHDR 337
+R + + R H+R
Sbjct: 285 SEPIRFSMEAMSRVFHEHER 304
>U41540-6|AAM54183.1| 934|Caenorhabditis elegans Hypothetical
protein F35H12.2b protein.
Length = 934
Score = 28.3 bits (60), Expect = 2.0
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +2
Query: 104 HSPRSIHDEDQNHRATREEVFCMERWIDPRLPLY--LPADVDLETGI*RVRPLDCAQEVL 277
HS + + D+N T VF +E DPR+ ++ L + +T + +D +
Sbjct: 225 HSDLQLLEMDRNATGTDSAVFVIEANWDPRVHMFEVLNTETPRDTRVFMTVAIDVIVSEI 284
Query: 278 LSAVRIAASSSPRFGRSHDR 337
+R + + R H+R
Sbjct: 285 SEPIRFSMEAMSRVFHEHER 304
>Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical
protein C14B1.4 protein.
Length = 376
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 328 RSTEPRAAGGSDAHSA*KHFLCTIKGPDSSYSCFEIHICRK 206
++ P AAG S + SA +CT++G S S + C K
Sbjct: 60 QTPNPNAAGASASGSANYKLMCTLEGHTKSISSAKFSPCGK 100
>AL110484-22|CAB54414.2| 305|Caenorhabditis elegans Hypothetical
protein Y38E10A.22 protein.
Length = 305
Score = 27.9 bits (59), Expect = 2.7
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 199 REARIDPPLHTEYF--LSGGAMILIFIVDGARAVISFCIRSAIPGYMVVPPDNTVLAYKS 26
++A D PL T Y L A + I+ + IS +RS +P Y+ N + A +
Sbjct: 26 QQAIADSPLFTAYMKLLKRQAELSPRILSALLSAISSIVRSHLPAYLKFQAKNGLTATEK 85
Query: 25 LRMST 11
L ST
Sbjct: 86 LIQST 90
>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
protein Y87G2A.5 protein.
Length = 1050
Score = 27.5 bits (58), Expect = 3.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 50 VWWYHHVPWYCRPYAEGNHSP 112
+WW H +P Y +A+G P
Sbjct: 507 LWWGHRIPAYYISFADGREQP 527
>AF016418-1|AAK18902.1| 494|Caenorhabditis elegans Hypothetical
protein C49G7.8 protein.
Length = 494
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 87 RMQKEITALAPSTMKIKIIAP-PERKYSVWSGGSILASLSTF 209
R ++++ L P + + +I P+ Y +W+ GSI+++L F
Sbjct: 17 RQYQKVSRLPPGPVSLPLIGNLPQIFYYLWTTGSIVSTLDLF 58
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 282 ALCASLPPAARGSVDLTTGCSTQACNLNYFTCT 380
A C S P A S + C+T++C +Y CT
Sbjct: 2810 ATCDSKPDCADASDENPNYCNTRSCPEDYNLCT 2842
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 282 ALCASLPPAARGSVDLTTGCSTQACNLNYFTCT 380
A C S P A S + C+T++C +Y CT
Sbjct: 2810 ATCDSKPDCADASDENPNYCNTRSCPEDYNLCT 2842
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,552,927
Number of Sequences: 27780
Number of extensions: 201661
Number of successful extensions: 552
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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