Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M04
         (389 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             144   2e-37
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.23 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   2.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   3.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   3.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   5.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   5.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   5.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   5.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   5.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   6.6  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   6.6  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   6.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   8.7  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  144 bits (350), Expect = 2e-37
 Identities = 69/72 (95%), Positives = 70/72 (97%)
 Frame = +3

Query: 12  VDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWSGGSIL 191
           VDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE+KYSVW GGSIL
Sbjct: 62  VDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSIL 121

Query: 192 ASLSTFLQMWIS 227
           ASLSTF QMWIS
Sbjct: 122 ASLSTFQQMWIS 133


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.4 bits (53), Expect = 0.23
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +1

Query: 97  RKSQPSLHPR*RSKSSRHQ 153
           ++SQP +HPR + ++ +HQ
Sbjct: 215 QQSQPGMHPRQQQQAQQHQ 233


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 15  DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVW 173
           DI++  Y + V      MYP  +  M+K I+    +  KI I  P E K  +W
Sbjct: 349 DIKEMEYLDKVFKETLRMYPPASILMRKAISDYTFNDTKITI--PKEMK--IW 397


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 5/10 (50%), Positives = 6/10 (60%)
 Frame = +2

Query: 53  WWYHHVPWYC 82
           WW H + W C
Sbjct: 526 WWSHVLGWLC 535


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 5/10 (50%), Positives = 6/10 (60%)
 Frame = +2

Query: 53  WWYHHVPWYC 82
           WW H + W C
Sbjct: 579 WWSHVLGWLC 588


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 116 SIHDEDQNHRATREEVFCMERWIDPRL 196
           S+   D++      E    ++W DPRL
Sbjct: 96  SLASPDESSLKYEVEFLLQQQWYDPRL 122


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 116 SIHDEDQNHRATREEVFCMERWIDPRL 196
           S+   D++      E    ++W DPRL
Sbjct: 96  SLASPDESSLKYEVEFLLQQQWYDPRL 122


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 116 SIHDEDQNHRATREEVFCMERWIDPRL 196
           S+   D++      E    ++W DPRL
Sbjct: 147 SLASPDESSLKYEVEFLLQQQWYDPRL 173


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 116 SIHDEDQNHRATREEVFCMERWIDPRL 196
           S+   D++      E    ++W DPRL
Sbjct: 96  SLASPDESSLKYEVEFLLQQQWYDPRL 122


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 275 LLSAVRIAASSSPRFGRSHDRLLN 346
           L++A+ +AAS     G    RLLN
Sbjct: 6   LMAAIALAASGLVNGGSHEKRLLN 29


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 293 IAASSSPRFGRSHD 334
           ++ SS+P  GR HD
Sbjct: 390 VSGSSTPGTGREHD 403


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 286 CAHRCLQQPAVRSIS 330
           C+H CL  P + S S
Sbjct: 43  CSHLCLPAPRINSKS 57


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 286 CAHRCLQQPAVRSIS 330
           C+H CL  P + S S
Sbjct: 43  CSHLCLPAPRINSKS 57


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 131 DQNHRATREEVFCMERWIDPRLPL 202
           D+N      ++F  + W D RL L
Sbjct: 76  DENSMTYAADIFFAQTWKDNRLRL 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,690
Number of Sequences: 438
Number of extensions: 2345
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)