Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M03
         (81 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1233 + 10003713-10004369,10004772-10004851,10004928-100050...    25   6.4  
09_02_0232 - 6111282-6111984,6112031-6112074                           25   8.4  

>01_01_1233 +
           10003713-10004369,10004772-10004851,10004928-10005011,
           10005012-10005190,10005347-10005391,10006148-10006335
          Length = 410

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 8   RRAHNSLKYLYPLK 49
           RR H+S K LYPLK
Sbjct: 246 RRTHSSTKILYPLK 259


>09_02_0232 - 6111282-6111984,6112031-6112074
          Length = 248

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 80 APAIADCSTVFSAGTGTS 27
          APAIA  STVF +GT ++
Sbjct: 18 APAIARSSTVFCSGTAST 35


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,284,916
Number of Sequences: 37544
Number of extensions: 17517
Number of successful extensions: 38
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 14,793,348
effective HSP length: 8
effective length of database: 14,492,996
effective search space used: 260873928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)