Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M02
         (188 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2SG94 Cluster: Tetracycline-efflux transporter; n=2; P...    32   2.8  
UniRef50_A6DEG8 Cluster: Putative uncharacterized protein; n=1; ...    31   3.8  
UniRef50_A0VKU2 Cluster: ATP-dependent endonuclease family prote...    31   5.0  
UniRef50_A4M5M6 Cluster: DNA polymerase III, alpha subunit; n=1;...    30   8.7  
UniRef50_Q9FK20 Cluster: Similarity to helix-loop-helix DNA-bind...    30   8.7  
UniRef50_Q54U92 Cluster: Putative uncharacterized protein; n=1; ...    30   8.7  

>UniRef50_A2SG94 Cluster: Tetracycline-efflux transporter; n=2;
           Proteobacteria|Rep: Tetracycline-efflux transporter -
           Methylibium petroleiphilum (strain PM1)
          Length = 418

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 91  VEIEFTVANFFNKPVLGTDHSTYSRRLILV 2
           V   F +ANFF  P+LG     Y RR +L+
Sbjct: 54  VTFAFAIANFFGSPILGALSDRYGRRPVLL 83


>UniRef50_A6DEG8 Cluster: Putative uncharacterized protein; n=1;
           Caminibacter mediatlanticus TB-2|Rep: Putative
           uncharacterized protein - Caminibacter mediatlanticus
           TB-2
          Length = 292

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = -2

Query: 178 KPPNTQLNGKNLSSMALKL----FFKSRYSKYEVEIEFTVANFFNKPV 47
           K  N   N + L S++++L     FKSRY K E+ + F   N F+K +
Sbjct: 141 KKKNIFPNKEELKSISIELEMINLFKSRYKKEEINLPFVYKNSFSKAI 188


>UniRef50_A0VKU2 Cluster: ATP-dependent endonuclease family protein;
           n=1; Delftia acidovorans SPH-1|Rep: ATP-dependent
           endonuclease family protein - Delftia acidovorans SPH-1
          Length = 600

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -2

Query: 175 PPNTQLNGKNLSSMALKLFFKSRYSKYEVEIEFTVANFFNKPVLGT-DHSTY 23
           PP    +  ++S+ AL++FF+ RY K   E +FT   FF  PVL    H T+
Sbjct: 112 PPPEGTDASDVSA-ALRVFFEGRYDK--EEDDFTGNTFFATPVLAEGTHPTF 160


>UniRef50_A4M5M6 Cluster: DNA polymerase III, alpha subunit; n=1;
           Petrotoga mobilis SJ95|Rep: DNA polymerase III, alpha
           subunit - Petrotoga mobilis SJ95
          Length = 1388

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 17/32 (53%), Positives = 21/32 (65%)
 Frame = -2

Query: 169 NTQLNGKNLSSMALKLFFKSRYSKYEVEIEFT 74
           N Q  GK++   +LKLFF SR  K EV+I FT
Sbjct: 33  NLQDIGKDIDEASLKLFF-SRLLKREVKISFT 63


>UniRef50_Q9FK20 Cluster: Similarity to helix-loop-helix DNA-binding
           protein; n=2; Arabidopsis thaliana|Rep: Similarity to
           helix-loop-helix DNA-binding protein - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 294

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -2

Query: 181 RKPPNTQLNGKNLSSMALKLFFKSRYSKYEVEIEFTVANFFNKPV 47
           RKPP + L+  + SS+  +L   S+ +  +VE++F+ AN   K V
Sbjct: 188 RKPPLSPLSSNHESSVINELVANSKSALADVEVKFSGANVLLKTV 232


>UniRef50_Q54U92 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 317

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -2

Query: 160 LNGKNL-SSMALKLFFKSRYSKYEVEIE-FTVANFFNKPVLGTDHST 26
           L G NL SS + K  +    S YE+EIE FT  N    P+ GT+ ST
Sbjct: 236 LGGLNLGSSFSFKSIYLPMQSVYEIEIEGFTSPNAL-YPIYGTNDST 281


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,008,149
Number of Sequences: 1657284
Number of extensions: 2535199
Number of successful extensions: 6411
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6410
length of database: 575,637,011
effective HSP length: 42
effective length of database: 506,031,083
effective search space used: 10120621660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)