Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M02
         (188 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    23   5.3  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    23   5.3  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    23   5.3  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    23   7.0  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    22   9.3  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    22   9.3  

>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 169 NTQLNGKNLSSMALKLFFKSRYSKY 95
           N Q +   + S  LKLFF+ +YS++
Sbjct: 192 NFQASYSPMVSECLKLFFRYQYSQF 216


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 181 RKPPNTQLNGKNLSSMALKLFFKSRYSKYEVEIEF 77
           R+  NT+++GK + ++  K   KS       E+EF
Sbjct: 627 RRTKNTKIDGKPILTLPPKTAVKSETDLSSSEMEF 661


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 124 LFFKSRYSKYEVEIEFTVANFF 59
           LF K+RY +  +++EF   NFF
Sbjct: 363 LFSKARYVRRAIQLEFN-KNFF 383


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 121 KVLAPWMTDSFHLVE 165
           KVL+ W+TD F +++
Sbjct: 125 KVLSEWLTDLFTIID 139



 Score = 22.6 bits (46), Expect = 7.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 54  LLKKFATVNSISTSYLEYRLLKKSFSAMDDRF-FPFS 161
           +L+KF     I+ SYL   L +K F+ +D R   P+S
Sbjct: 407 VLEKFHEFLKINFSYLTPTLSQKLFTVLDLRSQLPYS 443


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 85  IEFTVANFFNKPVLGTDHSTYSRRLILV 2
           +  ++A      V+G +HSTY  R + +
Sbjct: 191 LALSIAGVLGFYVIGMEHSTYLTRQVFI 218


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 78  NSISTSYLEYRLLKKSFSAMDDRFFPFS*VFGG 176
           N ++  YLE R ++ S SA + R    + +FGG
Sbjct: 241 NRLAEEYLELRNMQYSNSAKEYRRSKSNHLFGG 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 778,792
Number of Sequences: 5004
Number of extensions: 11728
Number of successful extensions: 46
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)