Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M02
         (188 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92804-3|CAB07250.1|  492|Caenorhabditis elegans Hypothetical pr...    29   0.46 
U51997-5|AAG24065.1|  668|Caenorhabditis elegans Hypothetical pr...    29   0.61 
Z48055-4|CAA88132.2|  301|Caenorhabditis elegans Hypothetical pr...    27   1.8  
U39650-5|AAK39185.2|  632|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical pr...    26   3.2  
DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.     26   3.2  
AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transpor...    26   3.2  
AF039044-8|AAG24129.1|  717|Caenorhabditis elegans Nuclear hormo...    26   4.3  
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ...    25   5.6  
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr...    25   7.5  
AL110482-8|CAE17990.1|  193|Caenorhabditis elegans Hypothetical ...    25   9.9  
AF022972-3|AAC48235.2|  526|Caenorhabditis elegans Udp-glucurono...    25   9.9  

>Z92804-3|CAB07250.1|  492|Caenorhabditis elegans Hypothetical
           protein K05D4.4 protein.
          Length = 492

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 11/30 (36%), Positives = 22/30 (73%)
 Frame = -2

Query: 163 QLNGKNLSSMALKLFFKSRYSKYEVEIEFT 74
           Q  G+ L+ M L LFF + +++Y+V+++F+
Sbjct: 435 QCLGEGLARMELFLFFANIFNRYDVQLDFS 464


>U51997-5|AAG24065.1|  668|Caenorhabditis elegans Hypothetical
           protein F19G12.2 protein.
          Length = 668

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 169 NTQLNGKNLSSMALKLFFKS--RYSKYEVEIEFTVANFFNKPVLGTDH 32
           N+QL   N S+ A K +F+    Y K       T A F++ PV+G DH
Sbjct: 114 NSQLAFHNSSNYAYKSYFEHVLMYGKEIQNSTLTAAGFYHDPVIG-DH 160


>Z48055-4|CAA88132.2|  301|Caenorhabditis elegans Hypothetical
           protein T07A5.2 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 8/20 (40%), Positives = 17/20 (85%)
 Frame = +2

Query: 47  NRFIKKVRDRELDFDFVFGI 106
           NRF++KVRD+++++ + F +
Sbjct: 171 NRFLRKVRDQDVEWGYCFDV 190


>U39650-5|AAK39185.2|  632|Caenorhabditis elegans Hypothetical
           protein C25A11.2 protein.
          Length = 632

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 100 KYEVEIEFTVANFFNKPVLGTDHST 26
           KYE+  +F  AN F + V+ ++HST
Sbjct: 122 KYEMNEKFAAANEFAEVVIDSNHST 146


>Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical
           protein T03F7.1 protein.
          Length = 610

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 115 KSRYSKYEVEIEFTVANFFNKPVLGTDH 32
           +S Y K   +   T+A FFN  VL  DH
Sbjct: 141 RSEYVKIPCDSNRTIAEFFNVKVLTHDH 168


>DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.
          Length = 610

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 115 KSRYSKYEVEIEFTVANFFNKPVLGTDH 32
           +S Y K   +   T+A FFN  VL  DH
Sbjct: 141 RSEYVKIPCDSNRTIAEFFNVKVLTHDH 168


>AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transporter
           protein protein.
          Length = 610

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 115 KSRYSKYEVEIEFTVANFFNKPVLGTDH 32
           +S Y K   +   T+A FFN  VL  DH
Sbjct: 141 RSEYVKIPCDSNRTIAEFFNVKVLTHDH 168


>AF039044-8|AAG24129.1|  717|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 83 protein.
          Length = 717

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -1

Query: 170 EYSTKW-KESVIHGAKTFF*KSIFQIRSRNRVHGRELF**TGFRH*PLNVQP 18
           E + KW K  V+   KTFF K          + G E    T  RH   NV+P
Sbjct: 122 EIAQKWNKNDVLLMPKTFFSKKFAASNKAKGILGMEYMSDTVVRHLNCNVKP 173


>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
           protein ZC132.5 protein.
          Length = 1277

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 145 LSSMALKLFFKSRYSKYEVEI-EFTVANFFNKPVLGTDHSTYSRRLI 8
           +  MA KL  + R  K E  I E TVA   N P+   +H    +RLI
Sbjct: 731 IKKMATKLP-RPRQQKMEKAIPELTVAATGNPPITAAEHQWDEKRLI 776


>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical
           protein F22E10.2 protein.
          Length = 1324

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 175 PP--NTQLNGKNLSSMALKLFFKSRYS 101
           PP  NT  +GKNLSS+  K+ F  + S
Sbjct: 2   PPQENTDGSGKNLSSLRTKIDFDEKIS 28


>AL110482-8|CAE17990.1|  193|Caenorhabditis elegans Hypothetical
           protein Y39G8B.10 protein.
          Length = 193

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 174 HRILN*MERICHPWR*NFFLKVD 106
           HR L  +E +CH W  N F   D
Sbjct: 133 HRDLGGLEGVCHAWAKNGFCNND 155


>AF022972-3|AAC48235.2|  526|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein40 protein.
          Length = 526

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 106 YSKYEVEIEFTVANFFNKPVLGTDHSTYSRRL 11
           +SKY++  E  VAN F K +    ++  ++RL
Sbjct: 414 FSKYDLHNEKVVANAFRKILYDESYTLSAKRL 445


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,174,671
Number of Sequences: 27780
Number of extensions: 61254
Number of successful extensions: 189
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 231468760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)