Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_M01
         (332 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0486 + 19577507-19577568,19578119-19578218,19581128-195812...    93   4e-20
11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338     93   5e-20
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228...    93   5e-20
10_07_0189 + 13928680-13928848,13929005-13929267,13929365-13929985     28   2.1  
01_06_0052 - 25994156-25994485,25996861-25996878,25997668-25997880     27   4.9  
12_02_0457 + 19239816-19241319,19241337-19241632,19241729-192418...    26   6.4  
01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008     26   6.4  
01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448           26   6.4  
04_04_0910 - 29321128-29321276,29321977-29322508,29323301-293237...    26   8.5  

>12_02_0486 +
           19577507-19577568,19578119-19578218,19581128-19581214,
           19581852-19581914
          Length = 103

 Score = 93.5 bits (222), Expect = 4e-20
 Identities = 38/55 (69%), Positives = 42/55 (76%)
 Frame = +2

Query: 65  MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 229
           MGH+N+W SHP+ YG GSR CR C N HGLIRKYGL  CRQCFR  A DIGF K+
Sbjct: 1   MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKV 55


>11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338
          Length = 56

 Score = 93.1 bits (221), Expect = 5e-20
 Identities = 38/54 (70%), Positives = 41/54 (75%)
 Frame = +2

Query: 65  MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 226
           MGH+N+W SHP+ YG GSR CR C N HGLIRKYGL  CRQCFR  A DIGF K
Sbjct: 1   MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54


>03_06_0123 -
           31821915-31822094,31822187-31822324,31822413-31822817,
           31822897-31823212,31823305-31823543,31823800-31823903,
           31823987-31824145,31824326-31824510,31825318-31825427,
           31826900-31826947,31827047-31827241,31827354-31827422,
           31829521-31829620,31829879-31829940
          Length = 769

 Score = 93.1 bits (221), Expect = 5e-20
 Identities = 38/54 (70%), Positives = 41/54 (75%)
 Frame = +2

Query: 65  MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 226
           MGH+N+W SHP+ YG GSR CR C N HGLIRKYGL  CRQCFR  A DIGF K
Sbjct: 1   MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54


>10_07_0189 + 13928680-13928848,13929005-13929267,13929365-13929985
          Length = 350

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 256 KNLLNLSLVQLFKSNIMRILSEALPADIQAIFTNETMS 143
           K L +L+L +L+K  I R   E  P DI A    +T S
Sbjct: 143 KELADLALYRLYKKKITRGTGEEKPEDIAAASDGDTES 180


>01_06_0052 - 25994156-25994485,25996861-25996878,25997668-25997880
          Length = 186

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 149 HVCLSRLGMNGNPARIYVGVNTRYLRD 69
           H C +R G  GNP + +   ++R LRD
Sbjct: 157 HSCAARSGKFGNPCKRFCVFSSRELRD 183


>12_02_0457 +
           19239816-19241319,19241337-19241632,19241729-19241829,
           19241939-19242029,19242158-19242268,19242360-19242425,
           19242457-19242462
          Length = 724

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 159 RMRPCLFEQARHEREPCP 106
           R RP L+EQ+ H R+P P
Sbjct: 144 RRRPPLYEQSPHRRQPGP 161


>01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008
          Length = 749

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 132 PAQTDMVSFVNMA*ISAGSASESMRMILDLKSWTKLRFNK 251
           P+  DM +  +++   A  AS +  ++LD  +WT+ R+ +
Sbjct: 585 PSSPDMAAACHLSYYCAYLASAAPELLLDSAAWTEKRYKE 624


>01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448
          Length = 850

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 42  RKQTNFTSWVTQISGIHTHVDTGRVPVHAEPAQT 143
           R+ ++FTSWV  +  +      G+ P  A P Q+
Sbjct: 755 RRLSSFTSWVPDLRRVWALKHPGKEPAAAAPPQS 788


>04_04_0910 -
           29321128-29321276,29321977-29322508,29323301-29323706,
           29323933-29324028,29324563-29324645,29326620-29326732,
           29327156-29327315
          Length = 512

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 80  IWYSHPRRYGQGSRSCRACSNRHG 151
           IW  H RR G+GS + R   +RHG
Sbjct: 306 IWPPHARRDGRGSEAAR--MSRHG 327


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,636,635
Number of Sequences: 37544
Number of extensions: 172081
Number of successful extensions: 324
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)