Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_L24
(270 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa... 44 4e-06
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1... 30 0.049
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 27 0.46
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 24 4.3
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 23 5.7
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom... 23 5.7
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 23 7.5
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer... 23 7.5
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 23 9.9
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 23 9.9
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 23 9.9
>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
L22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 44.0 bits (99), Expect = 4e-06
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +3
Query: 162 LTAHTXAEDSILDVGNFEKYLKERVKVEGKTNNLGN 269
+ A D I DV FEKYL +R+KV+GKT NLG+
Sbjct: 14 IDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGS 49
>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 30.3 bits (65), Expect = 0.049
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 5 EAVTALHVFCCQDGSYKKPVQERQLHQN 88
+AV+ LH +C Q G Y+KP+ L N
Sbjct: 159 KAVSNLHAYCSQSGLYRKPLTTNYLTVN 186
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 27.1 bits (57), Expect = 0.46
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = -2
Query: 125 CREFCHFYSF-LTSFGVTAF---LGRASCNCHLGNRTRVALL 12
C F SF LTS +T++ L +A NCHL N+T V +L
Sbjct: 558 CYRFLQIRSFVLTSHQLTSWGCPLLKALENCHLQNQTSVVVL 599
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 23.8 bits (49), Expect = 4.3
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 247 PSTLTRSFKYFSKLPTSRMLSSAXVCAVNGKFKANL 140
P+ SFK LP + L A N K+KA+L
Sbjct: 169 PTVYNGSFKRLFYLPDNNDLLKEFAHATNTKYKASL 204
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 23.4 bits (48), Expect = 5.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 140 SSWHLCREFCHFYSFLTSFGVTAFLGRAS 54
S+W L + C F SFL TAF A+
Sbjct: 142 SAWILPEKNCAFISFLDPSHATAFFQDAA 170
>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 304
Score = 23.4 bits (48), Expect = 5.7
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +2
Query: 32 CCQDGSYKKPVQERQLH 82
C + Y KPV++R +H
Sbjct: 100 CATNSEYSKPVRKRAIH 116
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 23.0 bits (47), Expect = 7.5
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +3
Query: 144 LALNLPLTAHT 176
L+LNLPL AHT
Sbjct: 213 LSLNLPLNAHT 223
>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 250
Score = 23.0 bits (47), Expect = 7.5
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Frame = -3
Query: 250 LPSTLTRSFKYFSKLPTSRMLSSAXVCAV---NGKFKANLPLG 131
+P + ++F P LS VC V GK NLP G
Sbjct: 164 IPKDGSGKSQFFEGTPIPTTLSLVTVCGVCILKGKTHENLPWG 206
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 22.6 bits (46), Expect = 9.9
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -2
Query: 107 FYSFLTSFGVTAFLGRASCN 48
F+SF F V LG +CN
Sbjct: 1328 FHSFWNMFDVVVTLGSLTCN 1347
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 22.6 bits (46), Expect = 9.9
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 198 DVGNFEKYLKERVKVEGKTNN 260
+ GN +KY + +KV GK ++
Sbjct: 955 EAGNLKKYDQPNLKVSGKNDS 975
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 22.6 bits (46), Expect = 9.9
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2
Query: 128 LCREFCHFYSF 96
LCREF +FY F
Sbjct: 681 LCREFQYFYPF 691
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 949,523
Number of Sequences: 5004
Number of extensions: 13145
Number of successful extensions: 40
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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