Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L24
         (270 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1662 + 28447419-28447666,28448429-28448573                       36   0.004
03_02_0963 - 12769715-12769859,12770639-12770889                       34   0.014
10_06_0119 - 10956190-10956754,10956984-10957139,10958402-10958622     27   2.7  
07_01_1129 + 10466943-10467326,10467440-10467574,10467670-104679...    26   4.7  
09_02_0247 + 6222463-6222628,6223121-6223134                           25   6.3  
01_01_0451 + 3355782-3355823,3356410-3357222                           25   8.3  

>07_03_1662 + 28447419-28447666,28448429-28448573
          Length = 130

 Score = 35.9 bits (79), Expect = 0.004
 Identities = 15/30 (50%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
 Frame = +3

Query: 183 EDSILDVGNFEKYLKERVKVE-GKTNNLGN 269
           ED I+++ + EK+L+ER+KV  GK  NLG+
Sbjct: 32  EDKIMEIASLEKFLQERIKVAGGKAGNLGD 61


>03_02_0963 - 12769715-12769859,12770639-12770889
          Length = 131

 Score = 34.3 bits (75), Expect = 0.014
 Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = +3

Query: 183 EDSILDVGNFEKYLKERVKVE-GKTNNLG 266
           +D I+++ + EK+L+ER+KV  GK  NLG
Sbjct: 33  DDKIMEIASLEKFLQERIKVAGGKAGNLG 61


>10_06_0119 - 10956190-10956754,10956984-10957139,10958402-10958622
          Length = 313

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 7   GGNSATRVLLPRWQLQEARPRKAVTPKLVRKE*KWQNSRQRCQEE 141
           GG  AT    P W+ +  R R+   P    +  +W   R RC+EE
Sbjct: 230 GGRGATDGGRPDWRERPVRWRR---PAWRERRGRWWRRRPRCEEE 271


>07_01_1129 +
           10466943-10467326,10467440-10467574,10467670-10467972,
           10468155-10468247
          Length = 304

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 128 LCREFCHFYSFLTSFGVTAFLG 63
           LC++FCH +S  T FG T   G
Sbjct: 109 LCQQFCHRHSRFT-FGTTVIKG 129


>09_02_0247 + 6222463-6222628,6223121-6223134
          Length = 59

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 40  RWQLQEARPRKAVTPKLVRKE*KWQNSRQRCQEE 141
           RW +  A     ++P  +++  +W  S +RC +E
Sbjct: 17  RWPIPRALKELLLSPHCLKESPRWLYSSRRCWDE 50


>01_01_0451 + 3355782-3355823,3356410-3357222
          Length = 284

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 34  LPRWQLQEARPRKAVTPKLVRKE*K-WQNSRQRCQEED 144
           LP W  ++   RK+  P  + +  K W+   Q+ QEE+
Sbjct: 21  LPHWVRKKRTRRKSDGPDSIAETIKWWKEQNQKLQEEN 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,465,600
Number of Sequences: 37544
Number of extensions: 91874
Number of successful extensions: 243
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)