Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L24
         (270 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal prote...    32   0.048
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n...    26   4.2  
U39653-4|AAL56624.1|  649|Caenorhabditis elegans Prion-like-(q/n...    25   7.3  
Z49936-2|CAA90181.1|  586|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AY834228-1|AAV91314.1|  589|Caenorhabditis elegans Toll and inte...    25   9.7  

>U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform a protein.
          Length = 130

 Score = 32.3 bits (70), Expect = 0.048
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 183 EDSILDVGNFEKYLKERVKVEGKTNNL 263
           ED IL + + E +L E++KV GKT +L
Sbjct: 32  EDGILRIEDLEAFLNEKIKVNGKTGHL 58


>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 62
           protein.
          Length = 1256

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 234 HVLSSISQSCQHPGCYPQQXC 172
           H ++SISQS QHP    Q  C
Sbjct: 238 HSMNSISQSQQHPSQLSQLSC 258


>U39653-4|AAL56624.1|  649|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
           isoform b protein.
          Length = 649

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +1

Query: 34  LPRWQLQEARPRKAVTPKLVRKE*KWQNSRQRCQEED 144
           L R   QEA  +KA+ PKL RK  + +NS +R  + D
Sbjct: 562 LARAAEQEALRKKAMEPKLKRKS-RAKNSAKRPVQTD 597


>Z49936-2|CAA90181.1|  586|Caenorhabditis elegans Hypothetical
          protein F13B10.1b protein.
          Length = 586

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 25 RVLLPRWQLQEARPRKAVTP 84
          R LLPR+     RP+ AVTP
Sbjct: 24 RNLLPRFAAVSPRPKAAVTP 43


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 173 VCSQW*I*G*SSSWHLCREFCH 108
           VC +W   G     H CRE CH
Sbjct: 493 VCDKWLTCGTPGKNHHCREKCH 514


>AY834228-1|AAV91314.1|  589|Caenorhabditis elegans Toll and
          interleukin 1 receptordomain protein isoform f protein.
          Length = 589

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 25 RVLLPRWQLQEARPRKAVTP 84
          R LLPR+     RP+ AVTP
Sbjct: 24 RNLLPRFAAVSPRPKAAVTP 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,449,039
Number of Sequences: 27780
Number of extensions: 79515
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)