Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L23
         (305 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83239-1|CAB05807.1|  325|Caenorhabditis elegans Hypothetical pr...    30   0.37 
AL033514-37|CAA22087.2|  441|Caenorhabditis elegans Hypothetical...    29   0.85 
AF125448-5|AAD12810.1|  188|Caenorhabditis elegans Hypothetical ...    26   4.5  
AF047656-11|AAC05106.2|  139|Caenorhabditis elegans Hypothetical...    26   6.0  

>Z83239-1|CAB05807.1|  325|Caenorhabditis elegans Hypothetical
           protein T09F5.1 protein.
          Length = 325

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = +1

Query: 145 DIVLKQACIYRDIVQMSLLE*FINLFSKMITVV*Y 249
           DIV+++A +YRDIV  SL + +  L  K ++++ Y
Sbjct: 128 DIVMREAELYRDIVVTSLEDSYTKLAFKTLSILLY 162


>AL033514-37|CAA22087.2|  441|Caenorhabditis elegans Hypothetical
           protein Y75B8A.27 protein.
          Length = 441

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = -1

Query: 227 FENKLINYSSSDICTISL*MQACFKTMSNFINSILSY 117
           +++ L+NY  S  CTI+     C+ ++  ++ +I++Y
Sbjct: 366 YQSMLLNYEVSKNCTITNLWTQCWNSLLPYVKTIINY 402


>AF125448-5|AAD12810.1|  188|Caenorhabditis elegans Hypothetical
           protein H14E04.3 protein.
          Length = 188

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +3

Query: 9   RKQVLVRFRFCFFFIIDLLYIFNCSMT*LYICTFM 113
           + Q++ R      F++D+++ FN  ++  +IC F+
Sbjct: 110 QSQIIFRPLDIVKFVLDIIHFFNIPISLYFICVFL 144


>AF047656-11|AAC05106.2|  139|Caenorhabditis elegans Hypothetical
           protein F17E9.3 protein.
          Length = 139

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 180 YRTDVATRIVYQFIFENDNCG 242
           +RTD   R+ YQF FE D  G
Sbjct: 66  FRTDSPDRMSYQFRFEEDGDG 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,968,472
Number of Sequences: 27780
Number of extensions: 76868
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)