Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L22
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    30   0.091
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    28   0.37 
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    27   0.85 
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    27   1.1  
SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    27   1.1  
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    27   1.1  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   3.4  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    25   3.4  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   3.4  
SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|...    25   4.5  

>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 30.3 bits (65), Expect = 0.091
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 264 KKWTWFNESIVK*ILLHACDNGRYCWL 184
           +K  W N  IV    L AC+ G+Y WL
Sbjct: 129 EKRPWINTDIVCKFFLEACETGKYGWL 155


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 28.3 bits (60), Expect = 0.37
 Identities = 14/35 (40%), Positives = 26/35 (74%), Gaps = 3/35 (8%)
 Frame = +2

Query: 68  KILDD-DSVIATLETLKKEADDIGQ--KVEETDKV 163
           K+L+D DS I++LE+LK+E +++ +  KVE  + +
Sbjct: 640 KVLEDNDSTISSLESLKRENEELREQLKVEHEENI 674


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 27.1 bits (57), Expect = 0.85
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +2

Query: 5   EDLRLRQLEKSLLQALNDAKGKILDDD--SVIATLETLKKEADDIGQKVEETDKVIAEIE 178
           ED  +  L   +L  L DA     D++  S + T E   K+A D+   + +TD V + + 
Sbjct: 443 EDNLIVSLVPKILAYLLDAYSYERDEEVLSCVWTTEVPLKDAFDLKSVLRKTDNVESVLN 502

Query: 179 TVSQQYLPLSQACS 220
              ++Y   S  CS
Sbjct: 503 ACVEKYTLSSITCS 516


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 952

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +2

Query: 5    EDLRLRQLEKSLLQALNDAKGKILD--DDSVIATLETLKKEADDIGQKVEETDKVIAEIE 178
            E L +     +++  L+  +G + D  +++     E+ +  A+++  K E+ +KVI E+E
Sbjct: 814  ESLNIDLQNNAVVPELHFKEGMVYDSLENAYTYLAESKRMLANELQMKQEDLEKVILELE 873

Query: 179  TVSQQYLPLSQ 211
               + +L   Q
Sbjct: 874  AYKEIFLEEKQ 884


>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 5   EDLRLRQLEKSLLQALNDAKGKILDDDSVI 94
           +D R R+L K  L  L  AKGKI +  SVI
Sbjct: 63  QDKRARKLAKKRLGTLKRAKGKIEELTSVI 92


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 5   EDLRLRQLEKSLLQALNDAKGKILDDDSVI 94
           +D R R+L K  L  L  AKGKI +  SVI
Sbjct: 63  QDKRARKLAKKRLGTLKRAKGKIEELTSVI 92


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 29  EKSLLQALNDAKGKILDDDSVIA-TLETLKKEADDIGQKVEETDKVIAEIE 178
           + S L  +N  +  + DD+  I+ T + ++     I + V+E DK+++E++
Sbjct: 47  DDSYLDNVNPFEYNVADDEDTISMTSDGVEFHNLGITETVDEQDKILSELQ 97


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +2

Query: 5   EDLRLRQLEKSLLQALNDAKGKILDDDSVIAT-LETLKKEADDIGQKVEETDKVIAEIET 181
           E  R R LE+ + + +    G+   DD + A+  +T+K+E + + + ++   +    I++
Sbjct: 331 EKRRARSLEERMSKEMLTKLGESNVDDGMAASRYDTVKREKERLSEHLKSLQEQYEHIQS 390

Query: 182 VSQQYL 199
           V +  L
Sbjct: 391 VYKNVL 396


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 13/65 (20%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = +2

Query: 5    EDLRLRQLEKSLLQALNDAKGKILDDDSVIATL-ETLKKEADDIGQKVEETDKVIAEIET 181
            ++  +++L+  +  + N+ +GK+ D DS+I  L E +++  + + ++     ++  E E+
Sbjct: 1514 DESTIQELDHEITASKNNYEGKLNDKDSIIRDLSENIEQLNNLLAEEKSAVKRLSTEKES 1573

Query: 182  VSQQY 196
               Q+
Sbjct: 1574 EILQF 1578


>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 74  LDDDSVIATLETLKKEADDIGQKVEETDKVIAEIET 181
           +DD+S    LE+ KK+A  I +++  T +  A IE+
Sbjct: 13  VDDESTERNLESHKKQAKLILKRLSPTSEKRASIES 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,216,831
Number of Sequences: 5004
Number of extensions: 19344
Number of successful extensions: 74
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)