Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L21
         (209 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   0.78 
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2...    24   2.4  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    24   2.4  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    24   2.4  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    24   3.2  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    23   4.2  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    23   5.5  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    23   5.5  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    23   5.5  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    23   7.3  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    23   7.3  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    23   7.3  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        22   9.6  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    22   9.6  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    22   9.6  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    22   9.6  
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    22   9.6  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    22   9.6  

>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 0.78
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
 Frame = +1

Query: 52  YKKHIWRHYEYKKDSFKV-----KYKFPVFNIIKILHNVQKSV 165
           Y  +IW  +EYK  S K+     KY F   NI  I + +   +
Sbjct: 454 YLNNIWSVFEYKDPSTKLSALIPKYFFSELNIASICYEISSGL 496


>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
           Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 79  EYKKDSFKVKYKFPVFNIIKILHN 150
           E + DSF +  +  +FN  K LH+
Sbjct: 146 EKENDSFTINQEADIFNFAKYLHS 169


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 50  SWLASMEMNGSNSLPR 3
           S ++S+ MNGSNS+PR
Sbjct: 302 SVVSSVYMNGSNSVPR 317


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = -1

Query: 200 CHHLTHHRVPHSTDFWTLWRILMMLN 123
           C H+ H   P   D+W + ++   +N
Sbjct: 57  CVHIIHSYFPKDADYWNVDKLYTSVN 82


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 173 PHSTDFWTLW 144
           PH + FWT+W
Sbjct: 38  PHFSQFWTIW 47


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 6/30 (20%), Positives = 20/30 (66%)
 Frame = -3

Query: 150 IMENLDDVEHWELILDFEGVFLILVMSPNM 61
           + ++ DD++ W +I + + + ++ + SP++
Sbjct: 647 VKQDYDDIQSWTIIEEIQSLGVLHLSSPSV 676


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 176 VPHSTDFWTLWRILMMLNTGN 114
           +PHS D WT +    M   G+
Sbjct: 102 IPHSVDLWTNYCAFKMETNGD 122


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 5  EAMSWNHSSPSKQAKITKNI 64
          +A  WNH+S + QA I +++
Sbjct: 2  DAKPWNHTSEAFQASILEDL 21


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 99  EGVFLILVMSPNMFFVILAC 40
           E VF + V SPN F +  AC
Sbjct: 146 EQVFELKVWSPNQFLLNFAC 165


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 94  SLSYTRNVSKYVFCNLGLLRW 32
           S+ YT  ++ Y FCN   + W
Sbjct: 700 SIMYTNVLNVYAFCNTHDVSW 720


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = -1

Query: 197 HHLT----HHRVPHSTDFWTLWRILMMLNTGNLYLTLKESFLY 81
           HHL      H  P S DF   W IL  L+  +   + ++ F+Y
Sbjct: 19  HHLRGPEIEHLFPESMDFPKEWSILPFLSLPDGAHSSEKDFVY 61


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = -1

Query: 206 IHCHHLTHHRVP 171
           ++C++L HH++P
Sbjct: 455 VNCYNLLHHQIP 466


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 185  HHRVPHSTDFWTLWRILMMLNT 120
            H  VP + D W+LW  +  L T
Sbjct: 2423 HAFVPRTYDQWSLWNTVDKLLT 2444


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 34  IEASQDYKKHIWRHYEYKKDSFKVKYKFPVFNIIKILHNVQKS 162
           ++    Y KH++  + ++ +    KY  P  N    LHN Q S
Sbjct: 273 LDVHTSYWKHMFSLFGFQINENDWKYANPNLNRPPFLHNDQIS 315


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 7   GNELEPFISIEASQDYKKHIWRHY 78
           GNE+  +   E+ + +KK  WR++
Sbjct: 851 GNEMMKYPRSESFKMFKKSHWRYF 874


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 43  SQDYKKHIWRHYEYKKD 93
           S D   H+W ++ +KKD
Sbjct: 768 SLDTIDHLWTYFPFKKD 784


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 52  YKKHIWRHYEYKKDSFKVKYKFPVFNIIKILHNVQK 159
           YKK      EY +  F+   +     I K+L N+QK
Sbjct: 395 YKKRFLETQEYFRPRFEEATRVGNAMISKLLENLQK 430


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = -3

Query: 174 STLH*LLDIMENLDDVEHWELILDFEGVFLILVMSPNMFFVILACFDGDEWFQLIA 7
           S L  L  +++   D++  E++ DF  V L+ +++ N   ++L+C    E+F  +A
Sbjct: 282 SRLANLRHVVKKHRDIDS-EVLDDF--VVLLDILNGNKEVIMLSCAHWQEYFSALA 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 941,457
Number of Sequences: 5004
Number of extensions: 15480
Number of successful extensions: 50
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)