Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_L21
(209 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561... 26 3.6
09_06_0201 - 21545189-21545494,21545593-21545743,21545835-215460... 26 3.6
10_03_0013 + 7045552-7045686,7045868-7046083 26 4.8
06_01_0661 - 4807712-4807759,4807857-4807995,4808107-4808351,480... 25 6.3
04_04_0893 - 29152150-29153156,29153234-29153561,29153645-291538... 25 6.3
02_05_0833 + 32080845-32081118,32081483-32081663,32081825-320819... 25 6.3
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 25 6.3
01_03_0119 + 12709976-12710057,12710157-12710230,12710312-127108... 25 8.4
>12_02_1286 -
27555143-27555191,27555290-27555511,27555911-27556162,
27556683-27557062,27557202-27557311,27557864-27558033,
27558236-27558444,27558528-27558617,27559125-27559264,
27559356-27559463,27559626-27559716,27560736-27560852,
27561497-27561767,27561892-27562193,27562400-27562469,
27563464-27563702,27564613-27564846,27564943-27565179,
27565276-27565734
Length = 1249
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 161 DFWTLWRILMMLNTGNLYLTLKESFLYS 78
D WTLW + L + + TL +F YS
Sbjct: 398 DMWTLWPNMSFLLSKKIQYTLALTFCYS 425
>09_06_0201 -
21545189-21545494,21545593-21545743,21545835-21546072,
21546158-21546365,21546446-21546639,21546721-21546819,
21546886-21546922,21548242-21548775
Length = 588
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 159 LLDIMENLDDVEHWELILDFEGVFL 85
+LD+M DDV L+ DFE +F+
Sbjct: 236 ILDVMSTSDDVGKRNLVQDFEFLFV 260
>10_03_0013 + 7045552-7045686,7045868-7046083
Length = 116
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 49 DYKKHIWRHYEYKKDSFKVKYKFPVFNIIKILHNVQKSVE 168
D+K H R++ Y+ ++ ++ P K NV+K+VE
Sbjct: 6 DHKTHHQRNWMYRNSAYNLEKPKPKPKAKKKKRNVEKTVE 45
>06_01_0661 -
4807712-4807759,4807857-4807995,4808107-4808351,
4808482-4808800,4809140-4809364,4809453-4809619,
4809702-4809818,4809903-4810076,4810173-4810268,
4810351-4810567,4810663-4810781,4810931-4811123,
4811207-4811358,4811448-4811568,4811980-4812074
Length = 808
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = -3
Query: 171 TLH*LLDIMENLDDVEHWELILDFEGVFLILVMSPNMFF 55
T+H LLD++E D + + +F ++++SP+ +F
Sbjct: 247 TIHLLLDLLEAPDPANLEKFLGTIPMMFNVVILSPHGYF 285
>04_04_0893 -
29152150-29153156,29153234-29153561,29153645-29153879,
29154149-29154194,29154579-29154711
Length = 582
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 1 ARGNELEPFISIEASQDYKKHIW 69
ARG+ L P I + + K H+W
Sbjct: 88 ARGSSLLPLIGLTSEASIKYHVW 110
>02_05_0833 +
32080845-32081118,32081483-32081663,32081825-32081999,
32082088-32082220,32082303-32082373,32082738-32082821,
32083106-32083196,32083315-32083835,32083932-32084096,
32084181-32084399,32084859-32084986,32085104-32085293,
32085478-32085561,32085643-32085740,32086127-32086391,
32086511-32086673,32086792-32086972,32087299-32087370,
32087473-32087614
Length = 1078
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 34 IEASQDYKKHIWRHYEYKKDSFKVKYKFPVFNIIK 138
+E Q +++ W HYE ++ YK VFN +K
Sbjct: 229 VEDFQTFQQEGW-HYELDNPEEEISYKGVVFNEMK 262
>02_01_0598 +
4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 4 RGNELEPFISIEASQDYKKHIWRHYEYKKDS 96
RGN L F+ S+++ ++WR Y + + S
Sbjct: 371 RGNSLFSFLFDLKSKEHTYYVWRLYSFAQGS 401
>01_03_0119 +
12709976-12710057,12710157-12710230,12710312-12710809,
12711520-12712095,12712181-12712288,12712349-12712393,
12712614-12713342
Length = 703
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 79 EYKKDSFKVKYKFPVFNIIKIL--HNVQKSVECG 174
+Y D +V Y F F +IK + +V KS++ G
Sbjct: 340 QYNSDDLRVDYPFAKFFVIKSIGEDDVHKSIKYG 373
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,976,450
Number of Sequences: 37544
Number of extensions: 88724
Number of successful extensions: 238
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 14,793,348
effective HSP length: 49
effective length of database: 12,953,692
effective search space used: 259073840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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