Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_L19
(235 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 99 7e-23
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 99 7e-23
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 30 0.036
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 26 0.58
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 23 4.1
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 23 5.4
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe... 23 5.4
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe... 23 7.1
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 23 7.1
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 23 7.1
>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 99.1 bits (236), Expect = 7e-23
Identities = 48/80 (60%), Positives = 58/80 (72%), Gaps = 2/80 (2%)
Frame = +2
Query: 2 LFEVVDEHKLRIFYEKRMGAS*C-DLLGDEWKG-ILRVAGGNDKQGFPMKQGVLTNSRVR 175
L E+ D+ +LR+F EKRMG D +G E+ G + ++ GGNDKQGFPM QGVL RVR
Sbjct: 15 LIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRVR 74
Query: 176 LLMSKGHSCYRPRRDGERKR 235
LL+ GH CYRPRRDGERKR
Sbjct: 75 LLLRAGHPCYRPRRDGERKR 94
>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 99.1 bits (236), Expect = 7e-23
Identities = 48/80 (60%), Positives = 58/80 (72%), Gaps = 2/80 (2%)
Frame = +2
Query: 2 LFEVVDEHKLRIFYEKRMGAS*C-DLLGDEWKG-ILRVAGGNDKQGFPMKQGVLTNSRVR 175
L E+ D+ +LR+F EKRMG D +G E+ G + ++ GGNDKQGFPM QGVL RVR
Sbjct: 15 LIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRVR 74
Query: 176 LLMSKGHSCYRPRRDGERKR 235
LL+ GH CYRPRRDGERKR
Sbjct: 75 LLLRAGHPCYRPRRDGERKR 94
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 30.3 bits (65), Expect = 0.036
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -2
Query: 180 KRRTRLLVRTPCFIGKPCLS---LPPATRRIPFHSSPRRSHQLAP 55
KR V TP F+ +S LPP TRR+P P RS L P
Sbjct: 27 KREPARTVSTPAFMEPAPVSKKPLPPPTRRLPRKPLPFRSTSLQP 71
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 0.58
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 198 EWPFDIKRRTRLLVRTPCFIGKPCLSLP 115
EWP +K +LLVRT + PC + P
Sbjct: 26 EWPLLLKNFDKLLVRTGHYTPIPCGNNP 53
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 23.4 bits (48), Expect = 4.1
Identities = 7/30 (23%), Positives = 15/30 (50%)
Frame = -3
Query: 119 YRRQHGEYLSIRRLEDRINSRPYAFHRRYG 30
YR +HG++ + R + + Y + +G
Sbjct: 561 YRNEHGDHFNFRSIPGLLKPSTYGSFKHHG 590
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 23.0 bits (47), Expect = 5.4
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -3
Query: 215 DVVCSKSGLLTSRDVHGC 162
D++C+ + TS D+H C
Sbjct: 852 DILCNIKSIATSLDIHIC 869
>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 117 PPATRRIPFHSSPRRS 70
PP R+P +SSP++S
Sbjct: 201 PPPQMRLPAYSSPQKS 216
>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 17 DEHKLRIFYEKRMGAS*C 70
DE +LR+ +E+R G + C
Sbjct: 373 DESQLRVLWERREGITEC 390
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 22.6 bits (46), Expect = 7.1
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = -3
Query: 116 RRQHGEYLSIRRLEDR 69
+ Q+GEY+++ +LE R
Sbjct: 539 KTQNGEYIALEKLESR 554
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 22.6 bits (46), Expect = 7.1
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 174 RTRLLVRTPCFIGKPCLSLPPATRRIPFHSSPRRS 70
R R V + P +S PP++ P + SP+ S
Sbjct: 306 RPRRSVSLATGLNSPSVSKPPSSATGPLYHSPQSS 340
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 938,721
Number of Sequences: 5004
Number of extensions: 16240
Number of successful extensions: 35
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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