Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_L19
(235 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 90 3e-19
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 87 2e-18
09_06_0032 + 20353789-20353963,20354240-20354340,20354426-203545... 29 0.53
08_02_1482 - 27428208-27428514,27428605-27428906,27431176-274322... 29 0.53
03_05_0141 - 21210176-21212140 28 1.2
03_02_0800 + 11337206-11337532,11337634-11337957,11338060-113381... 28 1.2
02_05_1130 - 34319558-34319603,34320236-34320335,34320498-343205... 27 2.8
10_01_0171 + 1917520-1918056,1919201-1919336,1921873-1922060,192... 26 3.7
04_04_1676 - 35302498-35302836,35302911-35302997,35303063-353032... 26 3.7
01_06_1031 - 33945681-33945822,33946502-33946641,33946748-339469... 26 3.7
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 26 4.9
11_01_0439 + 3353516-3353962,3354403-3354483,3354675-3354947,335... 25 6.5
09_04_0637 - 19153136-19153513,19153607-19153759,19153857-191546... 25 6.5
05_03_0474 + 14481063-14481403,14481597-14481710,14483428-144836... 25 6.5
04_04_0188 - 23433753-23436572 25 6.5
01_06_1091 + 34464923-34465026,34465124-34465163,34465245-344653... 25 6.5
11_01_0482 - 3714442-3715593 25 8.6
07_03_0167 - 14649782-14649864,14649954-14650078,14650357-146504... 25 8.6
04_04_0653 - 26961775-26962244,26962332-26962767 25 8.6
01_07_0359 - 43042675-43042758,43042956-43043024,43043099-430431... 25 8.6
01_02_0087 - 10989050-10989655 25 8.6
01_01_1085 - 8534269-8534356,8535408-8536042 25 8.6
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 89.8 bits (213), Expect = 3e-19
Identities = 45/80 (56%), Positives = 59/80 (73%), Gaps = 4/80 (5%)
Frame = +2
Query: 8 EVVDEHKLRIFYEKRMGAS*C-DLLGDEWKG-ILRVAGGNDKQGFPMKQGVLTNSRVRLL 181
E+ D+ KLR FY+KR+ D LG+E+KG + ++ GG DKQGFPMKQGVLT+ RVRLL
Sbjct: 17 EIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTSGRVRLL 76
Query: 182 MSKGHSCYR--PRRDGERKR 235
+ +G C+R RRDGER+R
Sbjct: 77 LHRGTPCFRGYGRRDGERRR 96
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 87.0 bits (206), Expect = 2e-18
Identities = 44/80 (55%), Positives = 58/80 (72%), Gaps = 4/80 (5%)
Frame = +2
Query: 8 EVVDEHKLRIFYEKRMGAS*C-DLLGDEWKG-ILRVAGGNDKQGFPMKQGVLTNSRVRLL 181
E+ D+ KLR F++KR+ D LG+E+KG + ++ GG DKQGFPMKQGVLT RVRLL
Sbjct: 17 EIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTAGRVRLL 76
Query: 182 MSKGHSCYR--PRRDGERKR 235
+ +G C+R RRDGER+R
Sbjct: 77 LHRGTPCFRGYGRRDGERRR 96
>09_06_0032 +
20353789-20353963,20354240-20354340,20354426-20354560,
20354633-20354714,20354829-20354896,20354984-20355073,
20355133-20355257,20355384-20355717,20355841-20355957,
20356058-20356485,20356564-20356813,20356944-20357194,
20357278-20357587
Length = 821
Score = 29.1 bits (62), Expect = 0.53
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 71 DLLGDEWKGILRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 235
DL G E AG K+G + + +LT +V +SKG + + P RD + R
Sbjct: 221 DLAGSERASQTASAGMRLKEGSHINRSLLTLGKVIRQLSKGRNGHIPYRDSKLTR 275
>08_02_1482 -
27428208-27428514,27428605-27428906,27431176-27432228,
27432305-27432421,27432510-27432843,27433064-27433188,
27433408-27433475,27433555-27433636,27433753-27433866,
27433942-27434042,27434145-27434234,27434615-27434819
Length = 965
Score = 29.1 bits (62), Expect = 0.53
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 71 DLLGDEWKGILRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 235
DL G E AG K+G + + +LT +V +SKG + + P RD + R
Sbjct: 224 DLAGSERASQTASAGVRLKEGSHINRSLLTLGKVVRQLSKGRNGHIPYRDSKLTR 278
>03_05_0141 - 21210176-21212140
Length = 654
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 150 PCFIGKPCLSLPPATRRIPFHSSPRRS 70
P + P PP R P H++PRRS
Sbjct: 2 PLLLPPPPTPTPPCASRDPLHAAPRRS 28
>03_02_0800 +
11337206-11337532,11337634-11337957,11338060-11338194,
11338280-11338519
Length = 341
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Frame = +2
Query: 80 GDEWKGILRVAGGNDKQG--FPMKQGVLTN---SRVRLLMSKG 193
GD WKG++ +A G K G +P+ VL + S R+L+S+G
Sbjct: 33 GDYWKGVVGLAKGLRKVGSAYPLVVAVLPDVPESHRRILISQG 75
>02_05_1130 -
34319558-34319603,34320236-34320335,34320498-34320577,
34320680-34320840,34321602-34321731,34322055-34322230,
34322873-34323068,34323768-34323889,34324376-34324468,
34324672-34324740,34325259-34325423,34325771-34326061
Length = 542
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 159 VRTPCFIGKPCLSLPPATRRIPFHSSPRRSHQLA 58
VRTP + L+L P+T +IP SS H+ A
Sbjct: 105 VRTPLSLVLAVLTLTPSTLKIPMPSSVDEWHERA 138
>10_01_0171 +
1917520-1918056,1919201-1919336,1921873-1922060,
1922491-1922694,1923913-1924425
Length = 525
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 98 ILRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSC 202
+LR+ GND ++ G + NS + ++ + H C
Sbjct: 301 VLRIENGNDGSMITIQHGQVINSGIWIIKTPFHIC 335
>04_04_1676 -
35302498-35302836,35302911-35302997,35303063-35303286,
35303375-35303675,35303762-35303860,35304895-35305032,
35305108-35305326
Length = 468
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 11 VVDEHKLRIFYEKRMGAS*CDLLGDEWKGILRVAGGND 124
+ H+L +F KR G D L EW +L GND
Sbjct: 220 IAQNHRLLMFTSKR-GKDGSDGLAYEWDYVLETQYGND 256
>01_06_1031 -
33945681-33945822,33946502-33946641,33946748-33946995,
33947355-33947576,33948188-33948839
Length = 467
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 140 MKQGVLTNSRVRLLMSKGHSCYRPRRDGERK 232
++ + + R R+ M++GHS YRP G+ K
Sbjct: 432 IRDETMYDPRERIEMAQGHSLYRPSLLGQPK 462
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 8 EVVDEHKLRIFYEKR 52
E+ DE KLRI YEK+
Sbjct: 499 EIKDEEKLRILYEKK 513
>11_01_0439 +
3353516-3353962,3354403-3354483,3354675-3354947,
3355081-3355212,3355303-3355476,3355568-3355702,
3355746-3355797,3355954-3356093,3356574-3356705,
3356787-3356921,3356995-3357201,3357779-3357943
Length = 690
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 110 QHGEYLSIRRLEDRINSRPY 51
QHGEY+S+ ++E ++ PY
Sbjct: 558 QHGEYVSLGKVEAALSVCPY 577
>09_04_0637 -
19153136-19153513,19153607-19153759,19153857-19154675,
19155068-19155174,19155434-19155548
Length = 523
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 83 DEWKGILRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGH 196
D G R + + + FP+ QGVLT S +L +G+
Sbjct: 461 DTTHGNARCSEDSSDECFPVSQGVLTESPRAVLAIRGY 498
>05_03_0474 +
14481063-14481403,14481597-14481710,14483428-14483676,
14485844-14486225
Length = 361
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 126 LSLPPATRRIPFHSSPRRSHQ 64
L+LP + RRIPF ++ HQ
Sbjct: 53 LTLPASFRRIPFPAAAEHQHQ 73
>04_04_0188 - 23433753-23436572
Length = 939
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 108 TRRIPFHSSPRRSHQLAPIRFS*KIRSLC 22
T +PFH +PRR +L P +R LC
Sbjct: 4 TAALPFHPTPRR--KLPPASAGASLRQLC 30
>01_06_1091 +
34464923-34465026,34465124-34465163,34465245-34465328,
34465457-34465480,34465582-34465655,34465726-34465812,
34465922-34466006,34466215-34466261,34467048-34467113,
34468307-34468397,34468477-34468548
Length = 257
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 134 SPACRYRRQHGEYLSIRRLEDRINS 60
S A Y + +GE +S++ L DR+ S
Sbjct: 102 SEAASYEKVYGEPISVKELADRVAS 126
>11_01_0482 - 3714442-3715593
Length = 383
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 126 LSLPPATRRIPFHSSPRRSHQL 61
L PPA ++ FH SP H++
Sbjct: 66 LEAPPAASQLSFHCSPCSKHRV 87
>07_03_0167 -
14649782-14649864,14649954-14650078,14650357-14650400,
14650873-14651003,14652469-14652559,14653335-14653445,
14653623-14653774,14653863-14654067,14654436-14654764,
14654850-14655309
Length = 576
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 113 GGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRP 211
GGN+++ F + N R R + + CY P
Sbjct: 263 GGNERRKFEPSVTIYGNDRTRKSIQPFYGCYDP 295
>04_04_0653 - 26961775-26962244,26962332-26962767
Length = 301
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 138 GKPCLSLPPATRRIPF 91
G+ CL LPP R +PF
Sbjct: 32 GERCLPLPPGPRGLPF 47
>01_07_0359 -
43042675-43042758,43042956-43043024,43043099-43043159,
43043260-43043768,43044545-43045153,43045697-43045972,
43046581-43046769,43047006-43047116,43047621-43047908,
43047990-43048041,43048648-43048824,43049249-43049314,
43049675-43049929,43050071-43050577,43050807-43050886,
43050974-43051207
Length = 1188
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 90 HSSPRRSHQLAPIRFS*KIRSLCSSTTSNN 1
H S ++ +L P S I +CS TTSN+
Sbjct: 379 HYSEQQPLKLNPAEISEVIAEVCSETTSNS 408
>01_02_0087 - 10989050-10989655
Length = 201
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 29 LRIFYEKRMGAS*CDLLGDEWKGILRVAGGNDKQGFPMKQGV 154
L++FY R+ + DLLGD ++ + G D GV
Sbjct: 80 LQLFYANRVPPAVADLLGDPSVRLVGIGVGEDAAKLEADYGV 121
>01_01_1085 - 8534269-8534356,8535408-8536042
Length = 240
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 68 CDLLGDEWKGILRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGH 196
C GD G+L V GG + + + V + R+R +K H
Sbjct: 126 CSSAGDPNPGVLPVVGGPEVGKRTLVEHVCIDERIRQYFAKIH 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,664,994
Number of Sequences: 37544
Number of extensions: 127773
Number of successful extensions: 316
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 14,793,348
effective HSP length: 56
effective length of database: 12,690,884
effective search space used: 266508564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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