Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L19
         (235 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   117   1e-27
AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf (tbp-asso...    29   0.33 
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.        27   1.3  
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical...    27   1.3  
AF067942-9|AAG45572.1|  347|Caenorhabditis elegans Hypothetical ...    27   1.8  
Z50741-1|CAA90609.1|  395|Caenorhabditis elegans Hypothetical pr...    26   4.1  
U80843-14|AAB37960.2|  360|Caenorhabditis elegans Hypothetical p...    26   4.1  
L16559-6|AAA27931.1|  397|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z78539-3|CAB01730.1|  177|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AF025450-3|AAB70932.1|  331|Caenorhabditis elegans Hypothetical ...    25   7.2  
Z34533-9|CAA84303.2|  368|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z30973-5|CAA83224.2|  368|Caenorhabditis elegans Hypothetical pr...    25   9.5  
X74027-1|CAA52188.1|  566|Caenorhabditis elegans lamin protein.        25   9.5  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  117 bits (281), Expect = 1e-27
 Identities = 54/79 (68%), Positives = 64/79 (81%), Gaps = 2/79 (2%)
 Frame = +2

Query: 5   FEVVDEHKLRIFYEKRMGAS*C-DLLGDEWKG-ILRVAGGNDKQGFPMKQGVLTNSRVRL 178
           FEV +E KLR+F+EKRM      D LGDEWKG ++R+ GGNDKQGFPMKQG+LTN RVRL
Sbjct: 16  FEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQGFPMKQGILTNGRVRL 75

Query: 179 LMSKGHSCYRPRRDGERKR 235
           L+ KG SCYR R++GERKR
Sbjct: 76  LLKKGQSCYRERKNGERKR 94


>AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 2
           protein.
          Length = 1086

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 138 GKPCLSLPPATRRIPFHSSPRRSHQLAPI 52
           GK  LS P  T+++P H  PR  +  +P+
Sbjct: 451 GKIVLSPPEPTKKLPLHVDPRHEYTASPL 479


>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
          Length = 2553

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 77   LGDEWKGILRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCY 205
            LG+   G+ R A GND +GF        ++   L  S  HS Y
Sbjct: 1418 LGEAMTGMARHAKGNDTEGFCTSVRDSADALCSLAESASHSAY 1460


>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
            protein Y71G12B.11a protein.
          Length = 2553

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 77   LGDEWKGILRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCY 205
            LG+   G+ R A GND +GF        ++   L  S  HS Y
Sbjct: 1418 LGEAMTGMARHAKGNDTEGFCTSVRDSADALCSLAESASHSAY 1460


>AF067942-9|AAG45572.1|  347|Caenorhabditis elegans Hypothetical
           protein ZK6.2 protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 171 TRLLVRTPCFIGKPCLSLPPATRR 100
           TR +    CF+G+ C   PP TR+
Sbjct: 37  TRTMPIKKCFLGENCFERPPFTRK 60


>Z50741-1|CAA90609.1|  395|Caenorhabditis elegans Hypothetical
           protein F55G7.1 protein.
          Length = 395

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 126 LSLPPATRRIPFHSSPR 76
           ++LPP  RR+PF S P+
Sbjct: 53  INLPPNFRRVPFSSQPQ 69


>U80843-14|AAB37960.2|  360|Caenorhabditis elegans Hypothetical
           protein C32B5.4 protein.
          Length = 360

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 122 RYRRQHGEYLSIRRLEDRINSRPYAFHRRYGA 27
           RY ++ G Y +    E+ INS    F R YG+
Sbjct: 291 RYGKKVGTYYTFGTTEETINSAMKVFGRLYGS 322


>L16559-6|AAA27931.1|  397|Caenorhabditis elegans Hypothetical
           protein C06E1.8 protein.
          Length = 397

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -2

Query: 192 PFDIKRRTRLLVRTPCFIGKPCLSLPPATRRIPFHSSPRRSHQLAP 55
           PF + R   L + TP  +     SLP A+  IP   SP RS    P
Sbjct: 158 PFQLIRTPLLNLPTPQSLESSVPSLPIASIPIPALQSPIRSQPQTP 203


>Z78539-3|CAB01730.1|  177|Caenorhabditis elegans Hypothetical
           protein C31E10.4 protein.
          Length = 177

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 141 IGKPCLSLPPATRRIPFHSSPRRSHQLAPIRFS*KIRSL 25
           +G  C S+P ATR+I          +L  + F  K R L
Sbjct: 28  VGVACCSVPSATRKIKQRHDAMTMRRLISVIFQKKKRGL 66


>AF025450-3|AAB70932.1|  331|Caenorhabditis elegans Hypothetical
           protein C41H7.4 protein.
          Length = 331

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 35  IFYEKRMGAS*CDLLGDEWKGILRVAGGNDKQGFPMKQGVLTNS 166
           ++Y + +G    +L G+EW G  ++   +D     M  G L+NS
Sbjct: 138 LYYRETLGQFEANLRGEEWTGEDQIQDEDDIIYDGMLDGDLSNS 181


>Z34533-9|CAA84303.2|  368|Caenorhabditis elegans Hypothetical
           protein B0285.10 protein.
          Length = 368

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
 Frame = +2

Query: 71  DLLGDEWKG-------ILRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHS 199
           D LGDEWK        + R+ GG     F +       S V  +  +G S
Sbjct: 28  DFLGDEWKNVNRSEVTVTRILGGQSNHMFHVTSSTSATSFVLRIHREGQS 77


>Z30973-5|CAA83224.2|  368|Caenorhabditis elegans Hypothetical
           protein B0285.10 protein.
          Length = 368

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
 Frame = +2

Query: 71  DLLGDEWKG-------ILRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHS 199
           D LGDEWK        + R+ GG     F +       S V  +  +G S
Sbjct: 28  DFLGDEWKNVNRSEVTVTRILGGQSNHMFHVTSSTSATSFVLRIHREGQS 77


>X74027-1|CAA52188.1|  566|Caenorhabditis elegans lamin protein.
          Length = 566

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 127 LVVTAGNTENTFPFVA-*KIASTRAHTLFIEDTELVLIHH 11
           LVV AGN E +F F +  K+A  R+ T++  D   V  HH
Sbjct: 476 LVVKAGNKEASFQFSSRMKLAPHRSATVWSADAGAV--HH 513


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,297,186
Number of Sequences: 27780
Number of extensions: 97011
Number of successful extensions: 227
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,740,198
effective HSP length: 57
effective length of database: 11,156,738
effective search space used: 223134760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)