Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L17
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   2.8  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   4.9  
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    24   6.5  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    24   8.6  

>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 232 PLTRYNIMGDRTCRSTYVC 288
           PL   +++ +RTC S+Y+C
Sbjct: 339 PLAPMDVLTERTCLSSYLC 357


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 144 EKIKHVYVANGRDARRPTVTDS 209
           + +K  Y+++  DAR P+V+DS
Sbjct: 145 DTLKKTYLSSENDARYPSVSDS 166


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 88  VLCFYKRFVICIPDYSINMK 147
           V+  YKRFVI  PD++  +K
Sbjct: 189 VISGYKRFVIISPDHANQLK 208


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 368 LFFFFLKICTETFIYRKPHNHRM*RLRHTYVLRHVR 261
           LF FF+ IC    + R  + ++  RL H   ++  +
Sbjct: 68  LFLFFVSICVVILVVRYRYLNKYARLPHEAPIKEAK 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,549,376
Number of Sequences: 5004
Number of extensions: 28877
Number of successful extensions: 60
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)