Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L17
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0543 + 19272389-19272534,19273337-19273496,19273584-192737...    28   2.0  
06_03_1091 - 27540163-27540377,27540662-27540819,27540849-27540973     28   2.6  
03_05_0674 + 26619579-26619658,26620020-26620746,26620999-266214...    27   4.6  
06_03_1105 - 27634787-27636025                                         26   8.1  
06_03_0544 - 21980180-21980277,21980427-21980646,21980802-219808...    26   8.1  
05_03_0461 - 14299138-14299313,14299360-14299437,14299459-142995...    26   8.1  
04_01_0148 + 1710369-1710531,1711821-1712279,1712769-1712915,171...    26   8.1  

>07_03_0543 +
           19272389-19272534,19273337-19273496,19273584-19273741,
           19273852-19273945,19274082-19274198,19275119-19275229,
           19275309-19275396,19275615-19275718,19275796-19275867,
           19275950-19276039,19276151-19276308,19276746-19276752,
           19277140-19277194,19277273-19277421,19277543-19277664,
           19277916-19278105
          Length = 606

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +2

Query: 251 LWEIGHAAVHTCAVASTFCGYVVSYK*TFL----YIFSKKKK 364
           LW +GH A    AV +  C  +VSY   FL    ++F KK K
Sbjct: 187 LWSVGHKADKLAAVRTKNCFDIVSYM-IFLCGGTFVFPKKPK 227


>06_03_1091 - 27540163-27540377,27540662-27540819,27540849-27540973
          Length = 165

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +2

Query: 272 AVHTCAVASTFCGYVVSYK*TFLYI 346
           A  TCAVAS   GY+V +K  FLYI
Sbjct: 50  ASDTCAVASAASGYMV-FKSLFLYI 73


>03_05_0674 +
           26619579-26619658,26620020-26620746,26620999-26621486,
           26621746-26621902,26621975-26621998
          Length = 491

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 264 DMPQYIRVP*PLHSVVMWFPINKRFCTY-FQKKKKQ 368
           D  QY+ V   LHS ++++P+NK+  T+ F K + Q
Sbjct: 262 DTLQYLDVT--LHSTMIYYPLNKKTLTFGFAKSRIQ 295


>06_03_1105 - 27634787-27636025
          Length = 412

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 86  SKSSRCTMHAAGASRARA 33
           S SS CT+HAA   R+RA
Sbjct: 326 SSSSPCTLHAAAKPRSRA 343


>06_03_0544 -
           21980180-21980277,21980427-21980646,21980802-21980860,
           21981043-21981058
          Length = 130

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 312 MWFPINKRFCTYFQKKKKQ 368
           MW P++  FC Y +KKK +
Sbjct: 111 MWHPLSGGFCGYKRKKKNR 129


>05_03_0461 -
           14299138-14299313,14299360-14299437,14299459-14299583,
           14299918-14300078
          Length = 179

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -3

Query: 298 RGYGTRMYCGMSDLP*CYTE*VVAVGRRRSLSVTVGRRASRPLATYTCLI 149
           R  G R   G   L  CY + + A+   R      GRR SR L  +  L+
Sbjct: 104 RPRGGRFIVGKEPLHNCYGDPLPAINHPREERFIAGRRLSRKLPLHAPLL 153


>04_01_0148 +
           1710369-1710531,1711821-1712279,1712769-1712915,
           1713004-1714170,1714378-1714430
          Length = 662

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 276 TAACPISHNVIPSEWSLSVAVGHCRSPSG 190
           TA C  S    PS  + +VAVG C + SG
Sbjct: 14  TAVCAASSGAPPSPDAAAVAVGSCPTYSG 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,196,531
Number of Sequences: 37544
Number of extensions: 190317
Number of successful extensions: 465
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)