Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_L16
(337 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 115 2e-27
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 111 4e-26
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 4.1
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 5.4
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 24 5.4
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce... 24 5.4
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 24 7.1
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 24 7.1
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 24 7.1
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 23 9.4
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 23 9.4
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 115 bits (277), Expect = 2e-27
Identities = 53/91 (58%), Positives = 69/91 (75%)
Frame = +1
Query: 64 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 243
+VDPF+RKDWYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D
Sbjct: 20 VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77
Query: 244 ERSFRKFRLIAEDVQERNVLCNFHGMDLTTD 336
E SFRK +L ED+Q ++ L +F+G D+T+D
Sbjct: 78 EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSD 108
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 111 bits (266), Expect = 4e-26
Identities = 50/91 (54%), Positives = 69/91 (75%)
Frame = +1
Query: 64 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 243
+VDPF+RK+WYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D
Sbjct: 20 VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77
Query: 244 ERSFRKFRLIAEDVQERNVLCNFHGMDLTTD 336
E +FRK +L ED+Q ++ L +F+G+ +T+D
Sbjct: 78 EHAFRKVKLRVEDIQGKSCLTSFNGLSITSD 108
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 24.6 bits (51), Expect = 4.1
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 144 PCQSHPGNKNCI*GSKGACF 203
PC H K C G GACF
Sbjct: 347 PCGEHTCKKRCHSGLCGACF 366
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.2 bits (50), Expect = 5.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 172 IASEGLKGRVFEVSLADLQADSDAERSFRKFR 267
+ S GR + +AD DSD+ERS+R+ R
Sbjct: 351 VGSSSSHGRQQDSYIAD---DSDSERSYRRVR 379
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 185 PSDAIFVPWVRLTRVVPTCLLVNMDGALTSYQ 90
PSD+ F W +L R+V + + + LT YQ
Sbjct: 1905 PSDSTFPLWAKLPRLVISEDVQGISQPLTVYQ 1936
>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 24.2 bits (50), Expect = 5.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 111 RRFNIVPVFTGERINNLLLNTLLASFRKAFIFTD 10
R N+V VF G+ + N LN + + +FT+
Sbjct: 172 RTENVVKVFQGKNVKNDSLNLRVRVWITGIVFTE 205
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 23.8 bits (49), Expect = 7.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 324 VHAVEIAEYITFLDILSDKSELAERPFRI 238
VH++ + +IL+D S L RPF +
Sbjct: 36 VHSISKERRDSLTEILNDSSSLPARPFSL 64
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 23.8 bits (49), Expect = 7.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 165 SLGAIDKGGAHLSLGEHGRRFNIVPVFT 82
+LGAID G LGE F + P F+
Sbjct: 858 NLGAIDSEGVLTKLGEQMSLFPLSPRFS 885
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 23.8 bits (49), Expect = 7.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 312 EIAEYITFLDILSDKSELAERPFRITISLEIS 217
E+ Y+T LD++ + + E+ RI + E S
Sbjct: 460 EVLVYLTHLDVVDTEIVMTEKLARIVVGTEWS 491
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 23.4 bits (48), Expect = 9.4
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = -1
Query: 253 KTFPHHYQPGDQQGRPQKH 197
+ FP H++PG+ P H
Sbjct: 195 REFPAHHEPGEHMPPPPMH 213
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 23.4 bits (48), Expect = 9.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 75 RINNLLLNTLLASFRKAFIFTDPS 4
+I LLL L+ FRK+F D S
Sbjct: 189 QIGELLLTRLIVQFRKSFQRNDKS 212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,331,581
Number of Sequences: 5004
Number of extensions: 24626
Number of successful extensions: 63
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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