Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_L16
(337 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 132 5e-32
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 132 5e-32
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 132 7e-32
11_01_0807 - 7178278-7178548,7178629-7178756,7178847-7179815,718... 29 1.2
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377... 27 3.8
01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267 27 5.0
12_02_0023 - 12404617-12405285 26 6.6
09_02_0568 + 10748227-10748434,10749004-10749398 26 6.6
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 26 6.6
02_05_0952 + 33022742-33023125 26 6.6
08_01_1065 - 10868890-10869999,10870925-10871004,10871224-108712... 26 8.7
05_03_0085 - 8271718-8272005,8272110-8272393,8273610-8274012,827... 26 8.7
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 132 bits (320), Expect = 5e-32
Identities = 65/90 (72%), Positives = 73/90 (81%)
Frame = +1
Query: 67 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 246
VDPF +KDWYD+KAPS+F R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 247 RSFRKFRLIAEDVQERNVLCNFHGMDLTTD 336
+++RK RL AEDVQ +NVL NF GM TTD
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTD 108
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 132 bits (320), Expect = 5e-32
Identities = 64/90 (71%), Positives = 75/90 (83%)
Frame = +1
Query: 67 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 246
VDPF++KDWYD+KAP++F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 247 RSFRKFRLIAEDVQERNVLCNFHGMDLTTD 336
+++RK RL AEDVQ RNVL NF GM TTD
Sbjct: 79 QAYRKVRLRAEDVQGRNVLTNFWGMSFTTD 108
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 132 bits (319), Expect = 7e-32
Identities = 64/90 (71%), Positives = 73/90 (81%)
Frame = +1
Query: 67 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 246
VDPF +KDWYD+KAPS+F R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 247 RSFRKFRLIAEDVQERNVLCNFHGMDLTTD 336
+++RK RL AEDVQ +NVL NF GM TTD
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTD 108
>11_01_0807 -
7178278-7178548,7178629-7178756,7178847-7179815,
7180465-7180518,7180622-7180798,7180913-7181926,
7182038-7182101,7182247-7182563,7182797-7182847
Length = 1014
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 92 GTMLKRRPCSPRDKWAPPLSIAP 160
G + R PC PRDK+ P S+ P
Sbjct: 206 GAYIVRLPCGPRDKYLPKESLWP 228
>05_07_0283 -
28937027-28937110,28937211-28937549,28937641-28937754,
28937843-28937955,28939050-28939087,28939315-28939478,
28939746-28939794,28940986-28941152
Length = 355
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 139 TTLVNRTQGTKIASEGLKGRVFEV 210
TT+VN + K+A EG+KG ++V
Sbjct: 17 TTIVNLAEEAKLAREGVKGPGYQV 40
>01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267
Length = 769
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 247 FPHHYQPGDQQGRPQKHAPLDPQMQFLFPG 158
+P+ P D P++H PLD +Q + G
Sbjct: 386 YPYVSNPEDPNHEPRQHEPLDSDVQVIDEG 415
>12_02_0023 - 12404617-12405285
Length = 222
Score = 26.2 bits (55), Expect = 6.6
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = -3
Query: 329 VRSMPWKLQSTLRSWTSSAIS-LNLRKDXXXXXXXXXXXRETSKTRPFRPSDAIFVPWVR 153
+RS PW L +T +SW + ++ L R + PS + +P V
Sbjct: 11 MRSTPWDLLATHQSWMTWRMAWLGTRSSSQSGAWVTGHTARPVSSHASIPSLSYVIPIVA 70
Query: 152 LTR 144
+TR
Sbjct: 71 ITR 73
>09_02_0568 + 10748227-10748434,10749004-10749398
Length = 200
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 95 TMLKRRPCSPRDKWAPPLSIAPREQK 172
T+ KR+P RDK P++ AP +K
Sbjct: 163 TVAKRKPLQGRDKVGIPITPAPSNEK 188
>05_07_0329 - 29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 148 VNRTQGTKIASEGLKGRVFEVSLADLQADSDAER 249
+ QG KI+++GL+ + +L L+ D D +R
Sbjct: 991 IRAAQGVKISAQGLEHAIAGTALYVLKPDDDLDR 1024
>02_05_0952 + 33022742-33023125
Length = 127
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -2
Query: 207 LKNTPL*TLRCNFCSLGAIDKGGAHLSLGEH-GRR 106
++ P T RC +G + KG HLS+ GRR
Sbjct: 56 IERGPQLTCRCRRRFMGGVGKGAPHLSMARRKGRR 90
>08_01_1065 -
10868890-10869999,10870925-10871004,10871224-10871283,
10871490-10871678,10871931-10872092,10872989-10873100
Length = 570
Score = 25.8 bits (54), Expect = 8.7
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = -2
Query: 243 RITISLEISKGDLKNTPL*TLRCNFCSLGAIDKGGAHLSLGEHGRRFNIVPVFTGERINN 64
R+ +++ I K + P +F +G GGA S+G + +TG NN
Sbjct: 378 RVGMTVNIGKAPMIELPFGVPVDDFL-VGETAYGGAGPSIGAPSNDAAVAYAYTGALNNN 436
Query: 63 LLLNTLLAS--FRKAFIFTDP 7
+ +L+A F TDP
Sbjct: 437 TAVGSLMAPPIDEPTFTLTDP 457
>05_03_0085 -
8271718-8272005,8272110-8272393,8273610-8274012,
8274792-8274816,8275686-8276149
Length = 487
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 324 VHAVEIAEYITFLDILSDKSELAERPFRITISLEISKGDLKNT 196
+H + + F I +K LAE + T+S + S GD +T
Sbjct: 261 LHIARQSVILAFSKISPNKFHLAEHDDKTTLSFDFSSGDSVST 303
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,220,675
Number of Sequences: 37544
Number of extensions: 185504
Number of successful extensions: 472
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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