Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L16
         (337 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   138   7e-34
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    30   0.36 
U50191-6|AAK31554.2|  235|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical pr...    27   2.5  
Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical pr...    27   2.5  
Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical pr...    27   2.5  
Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical pr...    27   2.5  
Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical pr...    27   4.4  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  138 bits (335), Expect = 7e-34
 Identities = 65/90 (72%), Positives = 76/90 (84%)
 Frame = +1

Query: 67  VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 246
           VDPF+RK+WYD+KAP+MF  RQVG TL+NRTQGTKIASEGLKGRVFEVSL DL   +++E
Sbjct: 20  VDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL---NNSE 76

Query: 247 RSFRKFRLIAEDVQERNVLCNFHGMDLTTD 336
             FRKF+LIAEDVQ +NVL NFH M +T D
Sbjct: 77  ADFRKFKLIAEDVQGKNVLTNFHAMSMTHD 106


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
            protein Y66D12A.14 protein.
          Length = 2870

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -3

Query: 209  TSKTRPFRPSDAIFVPWVRLTRVVPTCLLVNMDGA 105
            TSK +P R  D I V   R T     CL V   GA
Sbjct: 2175 TSKAQPIRSDDVISVAGTRSTETTMKCLAVQFTGA 2209


>U50191-6|AAK31554.2|  235|Caenorhabditis elegans Hypothetical
           protein T14B4.8 protein.
          Length = 235

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 176 AIFVPWVRLTRVVPTCLLVNMDGALTSYQSLRVKG 72
           + F+P++R  R VPT  +++ +G +  Y +L   G
Sbjct: 119 SFFIPFLRPRRTVPTFSIIDWNGEVLGYYALASDG 153


>Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical
           protein C38C10.5b protein.
          Length = 1374

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 107 RRPCSPRDKWAPPLSIAPREQKL 175
           R P   ++ + PP  I PREQKL
Sbjct: 86  RMPSKIKEAFIPPAKITPREQKL 108


>Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical
           protein C38C10.5a protein.
          Length = 1368

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 107 RRPCSPRDKWAPPLSIAPREQKL 175
           R P   ++ + PP  I PREQKL
Sbjct: 86  RMPSKIKEAFIPPAKITPREQKL 108


>Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical
           protein C38C10.5b protein.
          Length = 1374

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 107 RRPCSPRDKWAPPLSIAPREQKL 175
           R P   ++ + PP  I PREQKL
Sbjct: 86  RMPSKIKEAFIPPAKITPREQKL 108


>Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical
           protein C38C10.5a protein.
          Length = 1368

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 107 RRPCSPRDKWAPPLSIAPREQKL 175
           R P   ++ + PP  I PREQKL
Sbjct: 86  RMPSKIKEAFIPPAKITPREQKL 108


>Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical
           protein E01G4.4 protein.
          Length = 534

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 247 FPHHYQPGDQQGRPQKHAPLDPQMQ 173
           + ++ Q   QQGRPQ++A   PQ Q
Sbjct: 34  YGYNNQQQQQQGRPQQYAGYPPQRQ 58


>Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical
           protein B0001.7 protein.
          Length = 731

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +1

Query: 187 LKGRVFEVSLADLQADSDAERSFRKFRLIAEDVQERN 297
           L+G  + +S+ D +A +D E S +  R IAE ++ER+
Sbjct: 201 LRGCSWIMSVVDGKAQTDGEFSDKDLREIAEFIRERH 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,513,671
Number of Sequences: 27780
Number of extensions: 153040
Number of successful extensions: 376
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)