Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_L15
(348 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 76 1e-15
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 75 3e-15
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 54 5e-09
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 50 1e-07
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 48 3e-07
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 48 6e-07
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 46 1e-06
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 46 1e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 44 9e-06
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 44 9e-06
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 44 9e-06
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 44 9e-06
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 43 1e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 43 2e-05
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 42 3e-05
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 42 4e-05
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 42 4e-05
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 41 6e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 40 1e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 38 3e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 37 0.001
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 37 0.001
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 36 0.001
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 34 0.007
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 33 0.013
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 33 0.017
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 32 0.029
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 31 0.068
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 31 0.068
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 30 0.089
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 30 0.12
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.16
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 29 0.21
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 29 0.27
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 28 0.36
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 28 0.48
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 27 0.63
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 0.63
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 27 1.1
SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr ... 25 3.4
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 3.4
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 24 7.8
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 24 7.8
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 76.2 bits (179), Expect = 1e-15
Identities = 31/47 (65%), Positives = 40/47 (85%)
Frame = +3
Query: 204 VFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEY 344
VFVGNIPY+ +E+++ +IF++VGPV TFKLV D ETG KGYGFCE+
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 74.9 bits (176), Expect = 3e-15
Identities = 31/47 (65%), Positives = 39/47 (82%)
Frame = +3
Query: 204 VFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEY 344
V+VGNIPYE EE++ DIF + GPV +F+LV D E+G+PKGYGFCEY
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 54.4 bits (125), Expect = 5e-09
Identities = 20/48 (41%), Positives = 35/48 (72%)
Frame = +3
Query: 204 VFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEYK 347
+FVG +P + TEE+ ++ F++ G VL L+ D++TG+P+G+GF Y+
Sbjct: 249 MFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYE 296
Score = 48.8 bits (111), Expect = 2e-07
Identities = 20/60 (33%), Positives = 36/60 (60%)
Frame = +3
Query: 168 EEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEYK 347
EE S ++ +F+G + +E T++ L+D F + G VL ++ D TG+ +G+GF +K
Sbjct: 153 EETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFK 212
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 49.6 bits (113), Expect = 1e-07
Identities = 23/63 (36%), Positives = 37/63 (58%)
Frame = +3
Query: 156 SKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGF 335
SK QS + +FVGN+ +E T+ LK+ F +VG + +L+ +TGK KG+GF
Sbjct: 214 SKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGF 273
Query: 336 CEY 344
++
Sbjct: 274 VDF 276
Score = 29.1 bits (62), Expect = 0.21
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 144 KMDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIF 260
K + +E E Q +S ++VGN+ + T+E L D F
Sbjct: 87 KYGRKEEGESQEESKRSPWGIWVGNLSFHTTKEILTDFF 125
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 48.4 bits (110), Expect = 3e-07
Identities = 18/48 (37%), Positives = 32/48 (66%)
Frame = +3
Query: 204 VFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEYK 347
+++GN+ ++ E+ + +FSE G + LV D+ETGK KG+ F +Y+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYE 80
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 47.6 bits (108), Expect = 6e-07
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = +3
Query: 204 VFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEY 344
+ V + EATEE+++D+F++ GPV L DR TG KGY EY
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEY 58
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 46.4 bits (105), Expect = 1e-06
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = +3
Query: 198 RSVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEY 344
+SV+VGN+ Y T E+L+ F+ G V ++ D+ TG PKG+ + E+
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEF 103
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 46.4 bits (105), Expect = 1e-06
Identities = 20/63 (31%), Positives = 37/63 (58%)
Frame = +3
Query: 159 KEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFC 338
K+ E + K ++VG +P+ E++++ FS+ GPVL ++ +R+TG K Y F
Sbjct: 92 KKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFI 151
Query: 339 EYK 347
E++
Sbjct: 152 EFE 154
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 43.6 bits (98), Expect = 9e-06
Identities = 18/51 (35%), Positives = 33/51 (64%)
Frame = +3
Query: 192 SMRSVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEY 344
S ++FV N+ ++ ++ L + FS+VGP+ +V + ETG+ +GYGF +
Sbjct: 3 SNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
Score = 40.7 bits (91), Expect = 6e-05
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = +3
Query: 201 SVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEYK 347
+VFV N+ +E TE++L + F + GP+ KLV D T + G GF +++
Sbjct: 278 TVFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFR 326
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 43.6 bits (98), Expect = 9e-06
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = +3
Query: 144 KMDKSKEKEEQSIM---DKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETG 314
K +S+ +E S + ++ R+VFV + T +L D F + GPV ++V D+ +G
Sbjct: 219 KRSRSRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISG 278
Query: 315 KPKGYGFCEY 344
+ KG + E+
Sbjct: 279 RSKGVAYVEF 288
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 43.6 bits (98), Expect = 9e-06
Identities = 14/48 (29%), Positives = 34/48 (70%)
Frame = +3
Query: 204 VFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEYK 347
++VGN+P+ ++ L D+F+++G V+ ++ ++ TG+ KG+G +++
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYE-PTGRSKGFGVVQFE 328
Score = 33.1 bits (72), Expect = 0.013
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 198 RSVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEY 344
R V+VGN+ Y+ +LK+ +VG VL + + + G KG EY
Sbjct: 66 RRVYVGNLSYQVRWFELKEFMGQVGNVLNCE-ILNLPNGLSKGCAIIEY 113
Score = 28.3 bits (60), Expect = 0.36
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 219 IPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYG 332
+PY + LKD+F + G V+ + ++E G+ +G G
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQE-GRSRGIG 226
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 43.6 bits (98), Expect = 9e-06
Identities = 17/66 (25%), Positives = 37/66 (56%)
Frame = +3
Query: 147 MDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKG 326
+ + + + + + + +V++ N+ E TE++ D+F + G + + LV D + KP+G
Sbjct: 244 VSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRG 302
Query: 327 YGFCEY 344
+GF Y
Sbjct: 303 FGFVNY 308
Score = 35.5 bits (78), Expect = 0.002
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +3
Query: 201 SVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEY 344
S++VG + TE L ++F+ +GPV + ++ D T + GY + +
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNF 128
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 43.2 bits (97), Expect = 1e-05
Identities = 17/65 (26%), Positives = 38/65 (58%)
Frame = +3
Query: 153 KSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYG 332
+S + + ++D S +++ N+P E+++ ++ G +L+F+L+ + G KG+
Sbjct: 296 RSDDYAKNDVLD-SKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFC 354
Query: 333 FCEYK 347
FCE+K
Sbjct: 355 FCEFK 359
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 42.7 bits (96), Expect = 2e-05
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +3
Query: 201 SVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEY 344
+VFVGN+ + ATE+ L F G + + +L D ++G+ KG+G+ +
Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
Score = 40.3 bits (90), Expect = 8e-05
Identities = 14/49 (28%), Positives = 31/49 (63%)
Frame = +3
Query: 201 SVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEYK 347
+VFVG + + ++ L F E G ++ +++ D ++G+ KGYG+ +++
Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFE 312
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 41.9 bits (94), Expect = 3e-05
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +3
Query: 198 RSVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEYK 347
R VFVGN+ +EA EE L F + G + ++V D +T KG+ + ++K
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFK 319
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 41.5 bits (93), Expect = 4e-05
Identities = 19/62 (30%), Positives = 35/62 (56%)
Frame = +3
Query: 159 KEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFC 338
K K ++ + +FVGN+P +++ E L+ F G V + ++ D+ +G+ KGY F
Sbjct: 79 KSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFV 138
Query: 339 EY 344
E+
Sbjct: 139 EF 140
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 41.5 bits (93), Expect = 4e-05
Identities = 20/48 (41%), Positives = 30/48 (62%)
Frame = +3
Query: 204 VFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEYK 347
+FVGN+ + +E L FSE ++ K+V DRE GK +G+GF +K
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFK 78
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 40.7 bits (91), Expect = 6e-05
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +3
Query: 189 KSMRSVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEY 344
K V+VGN+ + TEE++ +FS+ G + + DR T P G+ F EY
Sbjct: 29 KQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEY 80
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 39.9 bits (89), Expect = 1e-04
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 210 VGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEY 344
V N+ + EE+L+D+F G + L D+ETG+ KG+ F Y
Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 38.3 bits (85), Expect = 3e-04
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +3
Query: 201 SVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEY 344
++++GN+ + T+ L ++ + GPV+ + DR G+GFCE+
Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEF 59
Score = 38.3 bits (85), Expect = 3e-04
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +3
Query: 201 SVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEY 344
++FVGN+ E L D FS +G ++ V E G+ KGYGF Y
Sbjct: 100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSY 147
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 36.7 bits (81), Expect = 0.001
Identities = 13/59 (22%), Positives = 33/59 (55%)
Frame = +3
Query: 171 EQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEYK 347
++ ++ +++F+ + Y+ E ++ F+ GP+ ++V ++ TGK GY F ++
Sbjct: 91 DRHVIGDPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 36.7 bits (81), Expect = 0.001
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +3
Query: 210 VGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEYK 347
VGN+ ++ TE L D F E V + +LV D T + +G+G+ E++
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFE 141
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 36.3 bits (80), Expect = 0.001
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +3
Query: 141 FKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKP 320
F M +K ++ R+V++ +P ++E L + G V + K + D ET
Sbjct: 278 FPMSHDNKKSNMESTSRT-RNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLC 336
Query: 321 KGYGF 335
KGYGF
Sbjct: 337 KGYGF 341
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 33.9 bits (74), Expect = 0.007
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 198 RSVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDR 305
R+VF+GN+P TE+++++ GP+ K+V +R
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTER 241
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 33.1 bits (72), Expect = 0.013
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +3
Query: 147 MDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKG 326
+DK + + + +FV I E++L+ IFS+ G V +++ + T +G
Sbjct: 84 LDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRG 143
Query: 327 YGFCEY 344
+GF +
Sbjct: 144 FGFLSF 149
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 32.7 bits (71), Expect = 0.017
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +3
Query: 204 VFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEY 344
+FV + +E L+ IFS G +++ +++ D+ETG Y F E+
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEF 292
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 31.9 bits (69), Expect = 0.029
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 204 VFVGNIPYEATEEKLKDIFSEVGPVLTFKLV 296
+FVG IP +AT E + D F G +L KL+
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLM 36
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 30.7 bits (66), Expect = 0.068
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 237 EEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEYK 347
+ +L+D+FS G +L+ L +G KGYGF ++
Sbjct: 397 KSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFR 433
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 30.7 bits (66), Expect = 0.068
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +3
Query: 201 SVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEY 344
++++G + TE ++ +++ +G + KL+ +R TG GY F E+
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEF 141
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 30.3 bits (65), Expect = 0.089
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 177 SIMDKSMRSV-FVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEYK 347
S +++ + S+ F+ N+ ++ T E++ D+F GPV +L T + +G F Y+
Sbjct: 4 STVNQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 29.9 bits (64), Expect = 0.12
Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +3
Query: 147 MDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLTFKL--VFDRETGKP 320
+D + E +Q + + N+P+EAT++ ++ + G + + ++ FDR
Sbjct: 704 VDAAAEVRKQDSSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSA--- 760
Query: 321 KGYGFCEY 344
+G+ F E+
Sbjct: 761 RGFAFAEF 768
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 29.5 bits (63), Expect = 0.16
Identities = 15/69 (21%), Positives = 33/69 (47%)
Frame = +3
Query: 138 TFKMDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGK 317
+F ++S ++ +R++ V N+ T+E + +IF G + + +++
Sbjct: 79 SFSSNRSYSSSLSRSPEEPLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSEL 138
Query: 318 PKGYGFCEY 344
KGY + EY
Sbjct: 139 NKGYCYIEY 147
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 29.1 bits (62), Expect = 0.21
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +3
Query: 198 RSVFVGNIPYEATEEKLKDIFSEVGPVLTFKLV 296
R+VF+GN+P E+++++ F + G + K++
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL 331
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 28.7 bits (61), Expect = 0.27
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +3
Query: 201 SVFVGNIPYEATEEKLKDIFSEVGPV 278
SVFV NIP E ++ LK S GPV
Sbjct: 316 SVFVKNIPPETSDVSLKSAMSIFGPV 341
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 28.3 bits (60), Expect = 0.36
Identities = 12/25 (48%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +3
Query: 201 SVFVGNIPYEATEEKLKDIFS-EVG 272
+++VGN+P +EE+LK +FS +VG
Sbjct: 427 TIYVGNLPPSTSEEELKVLFSTQVG 451
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.9 bits (59), Expect = 0.48
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 198 RSVFVGNIPYEATEEKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEYK 347
R +F+GNIP E + + I G + +++ V D + +GF E++
Sbjct: 139 RMLFIGNIPKELDDFWMDKILRLSGKLASWRRVADADNSM-TSFGFAEFE 187
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 27.5 bits (58), Expect = 0.63
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 147 MDKSKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLTFKLV 296
++K EK ++S K S++VGN+P L ++F G F ++
Sbjct: 4 LEKLSEKNKRSTK-KCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHML 52
Score = 25.4 bits (53), Expect = 2.5
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 240 EKLKDIFSEVGPVLTFKLVFDRETGKPKGYGFCEY 344
++L+++FS+ G + + L T KGYGF +
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSF 469
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 27.5 bits (58), Expect = 0.63
Identities = 19/40 (47%), Positives = 24/40 (60%)
Frame = -3
Query: 331 P*PLGLPVSRSNTSLNVNTGPTSLNISFNFSSVAS*GILP 212
P P LPV TSLN + P S+NI N +SVA G++P
Sbjct: 908 PPPPPLPVK---TSLNTFSHPDSVNIVANDTSVA--GVMP 942
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 26.6 bits (56), Expect = 1.1
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +3
Query: 177 SIMDKSMRSVFVGNIPYEATEEKL----KDIFSEVGPVLTFKLVFD 302
S+ K + +FV ++ +EE+L KD F + GP+L K++ D
Sbjct: 72 SVRGKPVACLFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKD 117
>SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 268
Score = 25.0 bits (52), Expect = 3.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 162 EKEEQSIMDKSMRSVFVGNIPYEATEEK 245
EK +Q IMD + ++ F G I + E K
Sbjct: 163 EKSQQMIMDTARKAGFAGGIVVDHPESK 190
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.0 bits (52), Expect = 3.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 168 EEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEV 269
E+++ M+ +F G+IP + E K FS+V
Sbjct: 588 EDRAASSNEMQLLFEGSIPILTSYENYKQSFSDV 621
>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 23.8 bits (49), Expect = 7.8
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 102 YESSLVQEF*EYTFKMDKSKEKEEQSIMDKSMRSVFVG 215
YES V+EF + ++++ ++E+S +S F G
Sbjct: 304 YESCKVKEFEKDALELEEQTMEDEKSYPSSGTQSPFYG 341
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 23.8 bits (49), Expect = 7.8
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 156 SKEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPV 278
+ ++ I + R +FV N+P L ++FS++G V
Sbjct: 181 NSNSDDIDIFSHASRYLFVTNLPRIVPYATLLELFSKLGDV 221
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,361,080
Number of Sequences: 5004
Number of extensions: 25427
Number of successful extensions: 136
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -