Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L15
         (348 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   1.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   1.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   3.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   9.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          20   9.6  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    20   9.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 311 SFPVKHKFKRQYRPNFTKYILQF 243
           S  VK + K Q     TKYILQ+
Sbjct: 923 SINVKWQHKSQDTTEVTKYILQY 945



 Score = 20.6 bits (41), Expect = 5.5
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = -3

Query: 316  LPVSRSNTSLNVNTG---PTSLNISFNFSSVAS*G 221
            LP  R       N G    +S N S+NFSSV+  G
Sbjct: 1031 LPELRHGDIQGFNVGYRETSSSNPSYNFSSVSGDG 1065


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 311 SFPVKHKFKRQYRPNFTKYILQF 243
           S  VK + K Q     TKYILQ+
Sbjct: 919 SINVKWQHKSQDTTEVTKYILQY 941



 Score = 20.6 bits (41), Expect = 5.5
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = -3

Query: 316  LPVSRSNTSLNVNTG---PTSLNISFNFSSVAS*G 221
            LP  R       N G    +S N S+NFSSV+  G
Sbjct: 1027 LPELRHGDIQGFNVGYRETSSSNPSYNFSSVSGDG 1061


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 130 KNILSKWIKAKKKRNRVSWI 189
           K I+  WIK   + N  +W+
Sbjct: 337 KVIIDNWIKGTPQNNVPNWV 356


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 286 LNLCLTGKLVNLRAMGFA 339
           +NLC+ G+L      G A
Sbjct: 191 INLCMAGRLFGYLCPGMA 208


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 160 KKKRNRVSWINPC 198
           KK+  ++S INPC
Sbjct: 224 KKRVTKMSSINPC 236


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 177 SIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVL 281
           ++  +    +F G  PY      ++D  S  GPVL
Sbjct: 16  TVSSQDYSQLFAGFGPYIRQAVAMRDPRSNRGPVL 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,212
Number of Sequences: 438
Number of extensions: 1751
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)