Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_L14
(403 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 218 3e-58
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 217 4e-58
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera... 25 4.4
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 25 5.8
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom... 25 5.8
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 24 7.7
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 24 7.7
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 24 7.7
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 24 7.7
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 218 bits (532), Expect = 3e-58
Identities = 94/127 (74%), Positives = 112/127 (88%)
Frame = +1
Query: 22 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPRDDPSKPVHLTAFIGYKAGMTHVVREP 201
MSH KF PRHGS+GF P+KR+ R RGKVKAFP+DD SKPVHLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60
Query: 202 DRPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETSHGLRALLTIWAEHMSEDCRRRFYK 381
DRPGSK++K+EI+EAVTIIETPPMV VG VGY+ET GLR+L T+WAEH+SE+ +RRFYK
Sbjct: 61 DRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120
Query: 382 NWYKCKK 402
NW+K KK
Sbjct: 121 NWFKSKK 127
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 217 bits (531), Expect = 4e-58
Identities = 93/127 (73%), Positives = 112/127 (88%)
Frame = +1
Query: 22 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPRDDPSKPVHLTAFIGYKAGMTHVVREP 201
MSH KF PRHGS+GF P+KR+ R RGKVKAFP+DD SKPVHLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60
Query: 202 DRPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETSHGLRALLTIWAEHMSEDCRRRFYK 381
DRPGSK++K+EI+EAVT+IETPPMV VG VGY+ET GLR+L T+WAEH+SE+ +RRFYK
Sbjct: 61 DRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120
Query: 382 NWYKCKK 402
NW+K KK
Sbjct: 121 NWFKSKK 127
>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 4.4
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +3
Query: 6 RAIEEYVAQEVFGTSSWVDGI--LPQEEIPSSPW 101
RAI E + EV+GT + G+ L EE+P P+
Sbjct: 382 RAIAEDLDPEVYGTKRRILGMLALADEELPDVPF 415
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 24.6 bits (51), Expect = 5.8
Identities = 7/21 (33%), Positives = 17/21 (80%)
Frame = +3
Query: 24 VAQEVFGTSSWVDGILPQEEI 86
++++++G S+W+ GI Q+E+
Sbjct: 21 ISRDIYGNSTWLTGIDLQKEL 41
>SPBC1271.09 |||glycerophosphodiester
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 543
Score = 24.6 bits (51), Expect = 5.8
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +1
Query: 142 VHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETSHGLR 321
+ + A++G G DR G K ++ A I+ +C GA GY + +G+
Sbjct: 120 IGMIAYVGTIVGQLSFGWYSDRFG---RKNGMITATIILIVSTALCTGAYGYKGSINGML 176
Query: 322 ALL 330
+ L
Sbjct: 177 SAL 179
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 24.2 bits (50), Expect = 7.7
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +1
Query: 58 SMGFYPKKRSRRHRGKVKAFPRDDPSKPV 144
+M FY + + G FPR+ KP+
Sbjct: 199 AMAFYSQSKKYLEEGAKPPFPRESTEKPL 227
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 24.2 bits (50), Expect = 7.7
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = -3
Query: 275 TIGGVSIIVTASTISFLLIFDPGRSGSRTTWVIPALYPMNAVRCTGL 135
++G V++ V +T I++ IP++YP+ V+ G+
Sbjct: 1463 SVGDVNVKVNRNTREISFIYNVDEHKLEMAIKIPSVYPLQNVQVEGI 1509
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 24.2 bits (50), Expect = 7.7
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 160 IGYKAGMTHVVRE-PDRPGSKINKKEIVEAVTIIETPPMVC 279
I K + +VR P+RP S++NK +++ I E +C
Sbjct: 84 IASKEFLNELVRRFPERPPSRLNKIQVMILSLIEEWRKTIC 124
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 24.2 bits (50), Expect = 7.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 13 SKSMSHRKFSAPRHGSMGFYPKKRSRRHRGKVK 111
S S + FS PR + GF KK+ + R + K
Sbjct: 671 SPSTVNSGFSTPRSQATGFSKKKKDKGERFETK 703
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,679,641
Number of Sequences: 5004
Number of extensions: 31286
Number of successful extensions: 80
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -