Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_L14
(403 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 208 1e-54
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 206 4e-54
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 28 3.2
05_04_0324 - 20273797-20274261 27 5.6
03_05_0064 - 20385290-20385346,20385452-20387133,20387266-203880... 27 5.6
12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861 27 7.3
10_08_0526 + 18547154-18547197,18547320-18547467,18547558-185476... 27 7.3
08_02_1122 + 24468086-24468276,24468726-24468976,24469092-244691... 27 7.3
03_01_0469 - 3613062-3613745,3613952-3614512,3614600-3614690,361... 27 7.3
01_05_0662 - 24103475-24103735,24103831-24104085,24104280-241044... 27 7.3
10_08_0377 + 17343244-17343372,17344316-17344393,17344496-173445... 26 9.7
10_02_0173 + 6191676-6191764,6192147-6192260,6192411-6192638,619... 26 9.7
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 26 9.7
01_07_0184 + 41846416-41847132 26 9.7
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 208 bits (508), Expect = 1e-54
Identities = 89/127 (70%), Positives = 109/127 (85%)
Frame = +1
Query: 22 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPRDDPSKPVHLTAFIGYKAGMTHVVREP 201
MSHRKF PRHGS+GF P+KRS RHRGKVK+FP+DD SKP HLT+F+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREV 60
Query: 202 DRPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETSHGLRALLTIWAEHMSEDCRRRFYK 381
++PGSK++KKE EAVTIIETPP+V VG V Y++T GLR+L ++WA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
Query: 382 NWYKCKK 402
NW K KK
Sbjct: 121 NWCKSKK 127
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 206 bits (504), Expect = 4e-54
Identities = 88/127 (69%), Positives = 109/127 (85%)
Frame = +1
Query: 22 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPRDDPSKPVHLTAFIGYKAGMTHVVREP 201
MSHRKF PRHGS+GF P+KRS RHRGKVK+FP+DD +KP HLT+F+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREV 60
Query: 202 DRPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETSHGLRALLTIWAEHMSEDCRRRFYK 381
++PGSK++KKE EAVTIIETPP+V VG V Y++T GLR+L ++WA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120
Query: 382 NWYKCKK 402
NW K KK
Sbjct: 121 NWCKSKK 127
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 13 SKSMSHRKFSAPRHGSM-GFYPKKRSRRHRGKVKAFPRDDPSKPVHLT 153
S S+ H + P+ S+ G P +++ + KVK + P VH+T
Sbjct: 237 STSLEHSESPPPKRKSLDGRTPASSTKKGKKKVKFVDKKHPENAVHIT 284
>05_04_0324 - 20273797-20274261
Length = 154
Score = 27.1 bits (57), Expect = 5.6
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +1
Query: 115 FPRDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGA 288
FP D+P K VH+ G + +T ++ E P + +N EA + P CVG
Sbjct: 60 FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117
Query: 289 VGYIETSHGLRAL 327
+ ++ H LR L
Sbjct: 118 ISVLQ--HQLRQL 128
>03_05_0064 -
20385290-20385346,20385452-20387133,20387266-20388083,
20388184-20388303,20389036-20389305,20390094-20390269
Length = 1040
Score = 27.1 bits (57), Expect = 5.6
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 7 GLSKSMSHRKFSAPRHGSMGFYP-KKRSRRHRGKVKAFPRD 126
GL +S HR+ S+PR+ M YP + + G+ +A PRD
Sbjct: 130 GLLESKRHRRSSSPRY-CMKSYPFGNKIDGYHGEGRACPRD 169
>12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861
Length = 443
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 77 LG*NPIDP*RGAENFLCDI 21
LG P+ RGAE+FLCD+
Sbjct: 117 LGEPPLPTFRGAESFLCDV 135
>10_08_0526 +
18547154-18547197,18547320-18547467,18547558-18547604,
18548216-18548270,18548365-18548403,18548517-18548688,
18549135-18549201,18549378-18549434,18549637-18549873,
18551549-18551629,18551803-18551935
Length = 359
Score = 26.6 bits (56), Expect = 7.3
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = +1
Query: 136 KPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETS 309
+ + L GY G + R D P K + E+V I+ PP C A + S
Sbjct: 34 RELRLVEAFGYTLGGMFLARYDDSPAGKFD--ELVVIAGIVWNPPTSCAWAARVLVNS 89
>08_02_1122 +
24468086-24468276,24468726-24468976,24469092-24469182,
24469381-24469429,24469527-24469618,24469714-24469821,
24469912-24470046,24470153-24470563,24470664-24470805,
24470893-24470960,24471072-24471206,24471314-24471531,
24471634-24472004
Length = 753
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +1
Query: 52 HGSMGFYPKKRSRRHRGKVKAFPRDDPSKPVHLTAFIGYKAGMTHVVREPD 204
H + Y KRS R +PRD S +H+ A + Y +PD
Sbjct: 436 HNTDNLYSSKRSAVVRASDDFWPRDPASHTIHI-ASVAYNTVFLGEFMQPD 485
>03_01_0469 -
3613062-3613745,3613952-3614512,3614600-3614690,
3614782-3614870,3614962-3615027,3615309-3615423,
3615521-3615966
Length = 683
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 7 GLSKSMSHRKFSAPRHGSMGFYP 75
G KS +H++ PR+GSM + P
Sbjct: 83 GKEKSCTHKRTILPRYGSMEYLP 105
>01_05_0662 -
24103475-24103735,24103831-24104085,24104280-24104451,
24104535-24104762,24104864-24104997,24105101-24105184,
24105273-24105563,24105660-24105992,24106081-24106334,
24106435-24106591,24106674-24106777,24106879-24107039,
24107216-24107529,24107614-24107895,24107991-24108292,
24108367-24108457,24108566-24108619,24108785-24108861,
24108963-24109207,24109322-24109410,24110811-24111254
Length = 1443
Score = 26.6 bits (56), Expect = 7.3
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 281 THTIGGVSIIVTASTISFLLIF-DPGRSGSRTTWVIPALYPMNAVRCTGLLGSS 123
+HT G +S++ A+ F+L D + W+ P Y NA+ LG S
Sbjct: 665 SHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHS 718
>10_08_0377 +
17343244-17343372,17344316-17344393,17344496-17344558,
17344836-17344883,17345203-17345349,17346264-17346395,
17346905-17346945,17347605-17347633,17348969-17349096,
17349919-17349994,17350111-17350231,17350300-17350399,
17350491-17350572,17350664-17350746,17351978-17352088,
17352260-17352311,17352363-17352408,17352652-17352860,
17353128-17353251,17353667-17353741,17353837-17353891,
17354476-17354595,17354670-17354762,17354869-17355014,
17355152-17355329,17356876-17357110,17357824-17357912
Length = 929
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 265 PPMVCVGAVGYIETSHGLRALLTIWAEHMSEDCRRRF 375
PP+V + G + TS A ++ +++ EDCRR+F
Sbjct: 529 PPLVDILNKG-MSTSEETAAAASVAFKYICEDCRRKF 564
>10_02_0173 +
6191676-6191764,6192147-6192260,6192411-6192638,
6192898-6193183,6193350-6193500,6193615-6193811
Length = 354
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -3
Query: 302 SMYPTAPTHTIGGVSIIVTASTISF 228
SMYP P H I GV V A SF
Sbjct: 61 SMYPLVPGHEIAGVVTEVGADVKSF 85
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 26.2 bits (55), Expect = 9.7
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +1
Query: 130 PSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETS 309
P+ P+ L + + ++ PDR + K+ EA++ ++T + Y +++
Sbjct: 172 PTHPIRLGLALNFSVFYYEILNSPDR-ACNLAKQAFDEAISELDT-----LSEESYKDST 225
Query: 310 ---HGLRALLTIWAEHMSED 360
LR LT+W +SED
Sbjct: 226 LIMQLLRDNLTLWTSDISED 245
>01_07_0184 + 41846416-41847132
Length = 238
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/56 (21%), Positives = 24/56 (42%)
Frame = +1
Query: 211 GSKINKKEIVEAVTIIETPPMVCVGAVGYIETSHGLRALLTIWAEHMSEDCRRRFY 378
G ++ + E++ I+E + + GLRA WA + + C + F+
Sbjct: 64 GDDDHRAAVCESLVIVEYVDEAFPAPLLLLPADPGLRAAARFWARFIDDKCTKPFW 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,399,043
Number of Sequences: 37544
Number of extensions: 227456
Number of successful extensions: 651
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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