Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_L14
(403 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 220 3e-58
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 220 3e-58
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 220 3e-58
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 220 3e-58
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 220 3e-58
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 220 3e-58
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 62 1e-10
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 62 1e-10
AF003146-5|AAB54199.1| 299|Caenorhabditis elegans Hypothetical ... 30 0.54
U80836-14|AAB37896.1| 185|Caenorhabditis elegans Hypothetical p... 29 1.2
AL021492-3|CAA16382.3| 893|Caenorhabditis elegans Hypothetical ... 27 3.8
Z78201-4|CAB01590.2| 911|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z78019-10|CAE46691.1| 911|Caenorhabditis elegans Hypothetical p... 27 6.7
AC024761-6|AAF59467.3| 599|Caenorhabditis elegans Hypothetical ... 27 6.7
AC024761-5|AAU05550.1| 601|Caenorhabditis elegans Hypothetical ... 27 6.7
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 220 bits (538), Expect = 3e-58
Identities = 94/127 (74%), Positives = 110/127 (86%)
Frame = +1
Query: 22 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPRDDPSKPVHLTAFIGYKAGMTHVVREP 201
MSHRKFSAPRHG MGF PKKRSR +RG++KAFP+DD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 202 DRPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETSHGLRALLTIWAEHMSEDCRRRFYK 381
D+PGSK+NKKE+VEAVTI+ETPPMV G GY++T G RAL TIWAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 382 NWYKCKK 402
NW K KK
Sbjct: 121 NWAKSKK 127
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 220 bits (538), Expect = 3e-58
Identities = 94/127 (74%), Positives = 110/127 (86%)
Frame = +1
Query: 22 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPRDDPSKPVHLTAFIGYKAGMTHVVREP 201
MSHRKFSAPRHG MGF PKKRSR +RG++KAFP+DD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 202 DRPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETSHGLRALLTIWAEHMSEDCRRRFYK 381
D+PGSK+NKKE+VEAVTI+ETPPMV G GY++T G RAL TIWAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 382 NWYKCKK 402
NW K KK
Sbjct: 121 NWAKSKK 127
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 220 bits (538), Expect = 3e-58
Identities = 94/127 (74%), Positives = 110/127 (86%)
Frame = +1
Query: 22 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPRDDPSKPVHLTAFIGYKAGMTHVVREP 201
MSHRKFSAPRHG MGF PKKRSR +RG++KAFP+DD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 202 DRPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETSHGLRALLTIWAEHMSEDCRRRFYK 381
D+PGSK+NKKE+VEAVTI+ETPPMV G GY++T G RAL TIWAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 382 NWYKCKK 402
NW K KK
Sbjct: 121 NWAKSKK 127
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 220 bits (538), Expect = 3e-58
Identities = 94/127 (74%), Positives = 110/127 (86%)
Frame = +1
Query: 22 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPRDDPSKPVHLTAFIGYKAGMTHVVREP 201
MSHRKFSAPRHG MGF PKKRSR +RG++KAFP+DD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 202 DRPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETSHGLRALLTIWAEHMSEDCRRRFYK 381
D+PGSK+NKKE+VEAVTI+ETPPMV G GY++T G RAL TIWAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 382 NWYKCKK 402
NW K KK
Sbjct: 121 NWAKSKK 127
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 220 bits (538), Expect = 3e-58
Identities = 94/127 (74%), Positives = 110/127 (86%)
Frame = +1
Query: 22 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPRDDPSKPVHLTAFIGYKAGMTHVVREP 201
MSHRKFSAPRHG MGF PKKRSR +RG++KAFP+DD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 202 DRPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETSHGLRALLTIWAEHMSEDCRRRFYK 381
D+PGSK+NKKE+VEAVTI+ETPPMV G GY++T G RAL TIWAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 382 NWYKCKK 402
NW K KK
Sbjct: 121 NWAKSKK 127
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 220 bits (538), Expect = 3e-58
Identities = 94/127 (74%), Positives = 110/127 (86%)
Frame = +1
Query: 22 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPRDDPSKPVHLTAFIGYKAGMTHVVREP 201
MSHRKFSAPRHG MGF PKKRSR +RG++KAFP+DD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 202 DRPGSKINKKEIVEAVTIIETPPMVCVGAVGYIETSHGLRALLTIWAEHMSEDCRRRFYK 381
D+PGSK+NKKE+VEAVTI+ETPPMV G GY++T G RAL TIWAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 382 NWYKCKK 402
NW K KK
Sbjct: 121 NWAKSKK 127
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 62.5 bits (145), Expect = 1e-10
Identities = 26/34 (76%), Positives = 30/34 (88%)
Frame = +1
Query: 22 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPR 123
MSHRKFSAPRHG MGF PKKRSR +RG++KAF +
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 62.5 bits (145), Expect = 1e-10
Identities = 26/34 (76%), Positives = 30/34 (88%)
Frame = +1
Query: 22 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPR 123
MSHRKFSAPRHG MGF PKKRSR +RG++KAF +
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
>AF003146-5|AAB54199.1| 299|Caenorhabditis elegans Hypothetical
protein F56F4.2 protein.
Length = 299
Score = 30.3 bits (65), Expect = 0.54
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 262 TPPMVCVGAVGYIETSHGLRALLTIWAEHMSEDCRRRFYKNWY 390
T P GY++ S G+R +W E S+ + KNW+
Sbjct: 201 TDPNGYFDIAGYVDQSSGVRGRFWVWHECFSQKYHKDPCKNWF 243
>U80836-14|AAB37896.1| 185|Caenorhabditis elegans Hypothetical
protein B0432.12 protein.
Length = 185
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 210 WIKDQQKGDCRGSNNY*DSTNGMCWCCWIH*NLSW 314
W+ Q+KG+C G NY D +G+ C + + W
Sbjct: 85 WLGGQRKGECYGMRNY-DKDHGLNATCSLSNVVQW 118
>AL021492-3|CAA16382.3| 893|Caenorhabditis elegans Hypothetical
protein Y45F10D.7 protein.
Length = 893
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 351 HVLSPNSE*STETMRGFNVSNSTNTYHWWS 262
HVLS + S +R F V N T +H W+
Sbjct: 333 HVLSAGKDGSIPKIRCFFVDNETEAWHSWT 362
>Z78201-4|CAB01590.2| 911|Caenorhabditis elegans Hypothetical
protein ZK836.2 protein.
Length = 911
Score = 26.6 bits (56), Expect = 6.7
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Frame = -3
Query: 287 APTHTIGGVSIIVTASTISFLLIFDPGRSGSRTTWVIPAL-YPMNAVRCTGLLGSSLGKA 111
AP +GG +VT + I+F GRS + T + A YP+ + G + KA
Sbjct: 341 APHFRLGGTVHLVTNNQIAFTAESSVGRSSTHCTDIAKAFEYPV--IHVNGDHPEEVVKA 398
Query: 110 FTL-----PR*RRDLFLG*NPIDP*RGAENFLCDILFDSP 6
L R R+D+F+ N + R N L D F SP
Sbjct: 399 TRLALAYRERFRKDVFI--NLVCFRRWGHNELDDPTFTSP 436
>Z78019-10|CAE46691.1| 911|Caenorhabditis elegans Hypothetical
protein ZK836.2 protein.
Length = 911
Score = 26.6 bits (56), Expect = 6.7
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Frame = -3
Query: 287 APTHTIGGVSIIVTASTISFLLIFDPGRSGSRTTWVIPAL-YPMNAVRCTGLLGSSLGKA 111
AP +GG +VT + I+F GRS + T + A YP+ + G + KA
Sbjct: 341 APHFRLGGTVHLVTNNQIAFTAESSVGRSSTHCTDIAKAFEYPV--IHVNGDHPEEVVKA 398
Query: 110 FTL-----PR*RRDLFLG*NPIDP*RGAENFLCDILFDSP 6
L R R+D+F+ N + R N L D F SP
Sbjct: 399 TRLALAYRERFRKDVFI--NLVCFRRWGHNELDDPTFTSP 436
>AC024761-6|AAF59467.3| 599|Caenorhabditis elegans Hypothetical
protein Y38C1AA.5a protein.
Length = 599
Score = 26.6 bits (56), Expect = 6.7
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +1
Query: 103 KVKAFPRDDPSKPVHLTAFIGYKAGMTHVVREP--DRPGSKINKKEIVEAVTIIETP 267
KV A +DPS + + T+ + P D P S N KEI E TI+ +P
Sbjct: 310 KVDASKWNDPSAYATAPSTVDSTTPKTYREQPPTADAPFSSDNSKEIHETSTIVASP 366
>AC024761-5|AAU05550.1| 601|Caenorhabditis elegans Hypothetical
protein Y38C1AA.5b protein.
Length = 601
Score = 26.6 bits (56), Expect = 6.7
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +1
Query: 103 KVKAFPRDDPSKPVHLTAFIGYKAGMTHVVREP--DRPGSKINKKEIVEAVTIIETP 267
KV A +DPS + + T+ + P D P S N KEI E TI+ +P
Sbjct: 312 KVDASKWNDPSAYATAPSTVDSTTPKTYREQPPTADAPFSSDNSKEIHETSTIVASP 368
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,430,972
Number of Sequences: 27780
Number of extensions: 184912
Number of successful extensions: 464
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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