Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L13
         (513 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC052988-1|AAH52988.1|  980|Homo sapiens retinoic acid induced 1...    30   4.1  
AY354204-1|AAQ63889.2|  972|Homo sapiens retinoic acid induced 1...    30   4.1  
AY317139-1|AAP84319.1|  983|Homo sapiens RAI14 isoform protein.        30   4.1  
AF155135-1|AAF44722.1|  980|Homo sapiens novel retinal pigment e...    30   4.1  
AB037755-1|BAA92572.1|  989|Homo sapiens KIAA1334 protein protein.     30   4.1  

>BC052988-1|AAH52988.1|  980|Homo sapiens retinoic acid induced 14
            protein.
          Length = 980

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +2

Query: 257  ETMLASCRIRHEALIFAFLTIGVLAQDYQLPEDKREQLKQMLTDQCK 397
            +  LA C+ +H+ +I  +    + A   Q+ ED ++ LKQ+LT  CK
Sbjct: 929  QNQLAECKKQHQEVISVYRMHLLYAVQGQMDEDVQKVLKQILT-MCK 974


>AY354204-1|AAQ63889.2|  972|Homo sapiens retinoic acid induced 14
            isoform protein.
          Length = 972

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +2

Query: 257  ETMLASCRIRHEALIFAFLTIGVLAQDYQLPEDKREQLKQMLTDQCK 397
            +  LA C+ +H+ +I  +    + A   Q+ ED ++ LKQ+LT  CK
Sbjct: 921  QNQLAECKKQHQEVISVYRMHLLYAVQGQMDEDVQKVLKQILT-MCK 966


>AY317139-1|AAP84319.1|  983|Homo sapiens RAI14 isoform protein.
          Length = 983

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +2

Query: 257  ETMLASCRIRHEALIFAFLTIGVLAQDYQLPEDKREQLKQMLTDQCK 397
            +  LA C+ +H+ +I  +    + A   Q+ ED ++ LKQ+LT  CK
Sbjct: 932  QNQLAECKKQHQEVISVYRMHLLYAVQGQMDEDVQKVLKQILT-MCK 977


>AF155135-1|AAF44722.1|  980|Homo sapiens novel retinal pigment
            epithelial cell protein protein.
          Length = 980

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +2

Query: 257  ETMLASCRIRHEALIFAFLTIGVLAQDYQLPEDKREQLKQMLTDQCK 397
            +  LA C+ +H+ +I  +    + A   Q+ ED ++ LKQ+LT  CK
Sbjct: 929  QNQLAECKKQHQEVISVYRMHLLYAVQGQMDEDVQKVLKQILT-MCK 974


>AB037755-1|BAA92572.1|  989|Homo sapiens KIAA1334 protein protein.
          Length = 989

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +2

Query: 257  ETMLASCRIRHEALIFAFLTIGVLAQDYQLPEDKREQLKQMLTDQCK 397
            +  LA C+ +H+ +I  +    + A   Q+ ED ++ LKQ+LT  CK
Sbjct: 938  QNQLAECKKQHQEVISVYRMHLLYAVQGQMDEDVQKVLKQILT-MCK 983


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,378,330
Number of Sequences: 237096
Number of extensions: 933210
Number of successful extensions: 1960
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1960
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4820001670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)