Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L13
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical ...    29   1.5  
AC006714-5|AAN84811.1|  224|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z70269-2|CAA94224.1|  143|Caenorhabditis elegans Hypothetical pr...    28   3.4  

>AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical
           protein Y119D3B.12a protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 350 EDKREQLKQMLTDQCKKYGAEDKVATVDAAGRAFVECVKE*VDVNQVKNEIEE 508
           E +REQL + + D   +   E +   VDAA  A     K  V+V ++  E E+
Sbjct: 130 EQRREQLTKKMEDLMDEAALEGEKGNVDAAQTAVDRADKAKVEVEELTQEAEK 182


>AC006714-5|AAN84811.1|  224|Caenorhabditis elegans Hypothetical
           protein Y119D3B.12b protein.
          Length = 224

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 350 EDKREQLKQMLTDQCKKYGAEDKVATVDAAGRAFVECVKE*VDVNQVKNEIEE 508
           E +REQL + + D   +   E +   VDAA  A     K  V+V ++  E E+
Sbjct: 130 EQRREQLTKKMEDLMDEAALEGEKGNVDAAQTAVDRADKAKVEVEELTQEAEK 182


>Z70269-2|CAA94224.1|  143|Caenorhabditis elegans Hypothetical
           protein ZK1086.2 protein.
          Length = 143

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 400 FFALVCEHLF*LFPLIFRELIIL 332
           FFA+ C H   L PL+F ++ +L
Sbjct: 93  FFAMTCRHALFLVPLLFLQVFVL 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,723,290
Number of Sequences: 27780
Number of extensions: 149268
Number of successful extensions: 374
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)