Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_L12
(439 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 250 7e-68
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 250 7e-68
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 250 7e-68
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 71 8e-14
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 58 8e-10
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 31 0.059
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 26 2.2
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 26 2.2
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 26 2.9
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 26 2.9
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 25 3.9
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 5.1
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 25 6.7
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 6.7
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 24 8.9
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual 24 8.9
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 24 8.9
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 250 bits (612), Expect = 7e-68
Identities = 110/144 (76%), Positives = 128/144 (88%)
Frame = +3
Query: 6 RDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 185
+DVYKIGGIGTVPVGRVETG++KPG +V FAPA +TTEVKSVEMHHE+L +PGDNVGF
Sbjct: 249 QDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGF 308
Query: 186 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 365
NVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIAC
Sbjct: 309 NVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIAC 368
Query: 366 KFAEIKEKVDRRTGKSTEDNPKSI 437
KFAE+ EK+DRR+GK E++PK +
Sbjct: 369 KFAELIEKIDRRSGKKIEESPKFV 392
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 250 bits (612), Expect = 7e-68
Identities = 110/144 (76%), Positives = 128/144 (88%)
Frame = +3
Query: 6 RDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 185
+DVYKIGGIGTVPVGRVETG++KPG +V FAPA +TTEVKSVEMHHE+L +PGDNVGF
Sbjct: 249 QDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGF 308
Query: 186 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 365
NVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIAC
Sbjct: 309 NVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIAC 368
Query: 366 KFAEIKEKVDRRTGKSTEDNPKSI 437
KFAE+ EK+DRR+GK E++PK +
Sbjct: 369 KFAELIEKIDRRSGKKIEESPKFV 392
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 250 bits (612), Expect = 7e-68
Identities = 110/144 (76%), Positives = 128/144 (88%)
Frame = +3
Query: 6 RDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 185
+DVYKIGGIGTVPVGRVETG++KPG +V FAPA +TTEVKSVEMHHE+L +PGDNVGF
Sbjct: 249 QDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGF 308
Query: 186 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 365
NVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIAC
Sbjct: 309 NVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIAC 368
Query: 366 KFAEIKEKVDRRTGKSTEDNPKSI 437
KFAE+ EK+DRR+GK E++PK +
Sbjct: 369 KFAELIEKIDRRSGKKIEESPKFV 392
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 70.9 bits (166), Expect = 8e-14
Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 1/133 (0%)
Frame = +3
Query: 18 KIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSV-EMHHEALQEAVPGDNVGFNVK 194
K +GT+ G++E G +K + V+ P N T EV ++ + E + ++ GD V V+
Sbjct: 476 KYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVR 535
Query: 195 NVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFA 374
+++ GYV +KN P F AQ+ +L P ++ GY+ V+ HTA FA
Sbjct: 536 GDD-SDVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFA 593
Query: 375 EIKEKVDRRTGKS 413
++ K+D+ KS
Sbjct: 594 KLLHKLDKTNRKS 606
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 57.6 bits (133), Expect = 8e-10
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Frame = +3
Query: 9 DVYKIGGIGTVPVGRVETGILKPGTVV--VFAPANITTEVKSVEMHHEALQEAVPGDNVG 182
DV+ I G GTV GRVE G LK G + V +++ T V +EM + L AV GDN G
Sbjct: 259 DVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSHLKTTVTGIEMFKKQLDAAVAGDNCG 318
Query: 183 FNVKNVSVKELRRGYV 230
++++ ++L+RG +
Sbjct: 319 LLLRSIKREQLKRGMI 334
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 31.5 bits (68), Expect = 0.059
Identities = 24/71 (33%), Positives = 38/71 (53%)
Frame = -1
Query: 214 NSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTV 35
N+ + + T+ + + ASC S + + +SVV+ + +T TV + VST TGTV
Sbjct: 57 NTTSASVQTIAISQTDNAASCIPSASLLS--SSVVLYSAKETVTVSSYWSLVSTSVTGTV 114
Query: 34 PIPPILYTSLV 2
+P YTS V
Sbjct: 115 YVP---YTSSV 122
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.2 bits (55), Expect = 2.2
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 257 QGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSPHSLQIC-RNQRESRP 397
+GS ++S + +S + I CIG+ SPH +C R Q +P
Sbjct: 90 KGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQLNGKP 137
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 2.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 136 CTTRLYKKLYPVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGEL 267
CT + KL+PV L T + A+ T+ I T PG++
Sbjct: 196 CTMSIEGKLFPVETLFLQKPTENYVDSAIETVININSTYPPGDI 239
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 2.9
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -1
Query: 133 STDLTSVVMLAGAKTTTVPGFRIPVSTLPTGT--VPIPPIL 17
++DLT+ L +T+ + + + PT T +PIP +L
Sbjct: 615 NSDLTNSSTLLSPTSTSFTSYTVSATATPTSTSHIPIPTVL 655
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 25.8 bits (54), Expect = 2.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 406 PVRRSTFSLISANLQAMWAVWQSNTGVY 323
P +RST S ++ L W + N GVY
Sbjct: 330 PKKRSTHSYVAKILNPEWDAFLKNEGVY 357
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 25.4 bits (53), Expect = 3.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 401 TTVDFLFDFGKFAGYVGCVAIQYRCVSV*YLTWV 300
T +D+LF F+ +G + Y ++V Y+ WV
Sbjct: 73 TLIDYLFFSPPFSLSIGPSLLVYLSIAVSYMLWV 106
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 5.1
Identities = 15/68 (22%), Positives = 33/68 (48%)
Frame = +1
Query: 166 PVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGELQTSQRKSLC*ITQVKYQTDTHLYWIA 345
P + +++ S + S + +VT ++ TTH +++T + T + D+H +
Sbjct: 379 PTSSILTNSGSIKSGDHQIVTTSFVQTTTHGSQVETLTYVTTLTETILTTTYDSHTFLTT 438
Query: 346 TQPT*PAN 369
P+ P+N
Sbjct: 439 ITPS-PSN 445
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 65 YPKAWYCCRFCPC*HH 112
YPK CC+FC HH
Sbjct: 147 YPKGG-CCKFCSSVHH 161
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 24.6 bits (51), Expect = 6.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 382 LISANLQAMWAVWQSNTGV 326
L+SA+ W +W +TGV
Sbjct: 280 LVSASFDTTWRLWDVHTGV 298
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 24.2 bits (50), Expect = 8.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 294 LNHPGQISNGYTPVLDCHTAHIACK 368
L HP Q+SN +T C A AC+
Sbjct: 305 LPHPIQLSNYFTLPSSCAQADAACQ 329
>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
Length = 484
Score = 24.2 bits (50), Expect = 8.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 191 DVETNIVTGYSFL*SLVVHFHGLDFSS 111
DV N VTG F S+ + H LD S
Sbjct: 57 DVTLNKVTGVDFANSIFEYVHSLDSDS 83
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 24.2 bits (50), Expect = 8.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 230 NVTTAQFLDRYVFDVETNIVTGYS 159
++T F+D YV +++ IV G+S
Sbjct: 373 SLTDTSFMDDYVNELQLEIVPGFS 396
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,940,508
Number of Sequences: 5004
Number of extensions: 39455
Number of successful extensions: 121
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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