Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_L11
(155 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 78 2e-16
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 64 3e-12
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 43 6e-06
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 43 6e-06
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 42 1e-05
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 40 4e-05
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 39 1e-04
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 38 2e-04
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 38 2e-04
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 35 0.001
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 35 0.002
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 34 0.002
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 34 0.002
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 34 0.002
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 34 0.002
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 33 0.005
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 33 0.007
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 33 0.007
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 31 0.027
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 30 0.047
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 29 0.063
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 29 0.11
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 0.44
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 26 0.58
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 25 1.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 1.3
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 25 1.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 24 2.4
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 24 3.1
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S... 24 3.1
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 23 4.1
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi... 23 4.1
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 23 4.1
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 23 4.1
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 23 7.2
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 22 9.5
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 22 9.5
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 77.8 bits (183), Expect = 2e-16
Identities = 35/48 (72%), Positives = 42/48 (87%)
Frame = +3
Query: 12 IKLFVLDEADEMLSRGFKDQIHDVFTMLSADVQVILLSATMPDDVLEV 155
+++FVLDEADEMLSRGFKDQI+D+F +L QV+LLSATMP DVLEV
Sbjct: 162 VQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEV 209
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 63.7 bits (148), Expect = 3e-12
Identities = 25/48 (52%), Positives = 40/48 (83%)
Frame = +3
Query: 12 IKLFVLDEADEMLSRGFKDQIHDVFTMLSADVQVILLSATMPDDVLEV 155
+K+ +LDEADE+L++GFK+QI+D++ L QV+++SAT+P DVLE+
Sbjct: 164 VKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEM 211
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 42.7 bits (96), Expect = 6e-06
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +3
Query: 12 IKLFVLDEADEMLSRGFKDQIHDVFTMLSADVQVILLSATMPDDV 146
I++ V+DEAD ML GF D+++++ Q +L SATM D V
Sbjct: 406 IEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKV 450
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 42.7 bits (96), Expect = 6e-06
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +3
Query: 12 IKLFVLDEADEMLSRGFKDQIHDVFTMLSADVQVILLSATMPDDV 146
+ VLDEAD ML GF+ QI + + D Q ++ SAT P +V
Sbjct: 270 VTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEV 314
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 41.5 bits (93), Expect = 1e-05
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Frame = +3
Query: 12 IKLFVLDEADEMLSRGFKDQIHDVFTML--SADVQVILLSATMPDDVLEV 155
IK V+DEAD +LS F D + D F++L S D Q +L +AT+ D + ++
Sbjct: 154 IKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTATVTDAIRQL 203
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 39.9 bits (89), Expect = 4e-05
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +3
Query: 3 ASTIKLFVLDEADEML-SRGFKDQIHDVFTMLSADVQVILLSATMPDDV 146
A IK+FVLDEAD ML +G DQ + +L + Q++L SAT + V
Sbjct: 252 ARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERV 300
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 38.7 bits (86), Expect = 1e-04
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +3
Query: 6 STIKLFVLDEADEMLSRGFKDQIHDVF---TMLSADV-QVILLSATMPDDV 146
+ IK VLDEAD ML GF+ QI + M S + Q ++ SAT P D+
Sbjct: 328 ANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDI 378
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 37.9 bits (84), Expect = 2e-04
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +3
Query: 24 VLDEADEMLSRGFKDQIHDVFTMLSADVQVILLSATMP 137
VLDEAD M GF+ Q+ + + D Q +L SAT P
Sbjct: 573 VLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFP 610
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 37.9 bits (84), Expect = 2e-04
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 6 STIKLFVLDEADEMLSRGFKDQIHDVFTMLSADVQVILLSATMPDDVLE 152
S+I+ V DEAD + GF Q+ ++ L Q +L SAT+P +++
Sbjct: 212 SSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVD 260
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 35.1 bits (77), Expect = 0.001
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +3
Query: 6 STIKLFVLDEADEMLSRGFKDQIHDVFTMLSADVQVILLSATMPDDVLEV 155
S +++ +LDEAD +L GF+ + + + L Q +L SAT V ++
Sbjct: 184 SGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDL 233
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 34.7 bits (76), Expect = 0.002
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 12 IKLFVLDEADEMLSRGFKDQIHDVFTMLSADVQVILLSATMPDDV 146
+++ +LDEAD ++ GF+ + + + L + L SATM D V
Sbjct: 155 LEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLFSATMNDTV 199
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 34.3 bits (75), Expect = 0.002
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 12 IKLFVLDEADEMLSRGFKDQIHDVFTMLSADVQVILLSATMPDDV 146
+K V+DEAD MLS G+ + + + L Q L+SAT+ ++
Sbjct: 165 LKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNI 209
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 34.3 bits (75), Expect = 0.002
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +3
Query: 6 STIKLFVLDEADEML-SRGFKDQIHDVFTMLSADVQVILLSATMPDDV 146
+++K FVLDE D++L S + I +VF QV++ SAT+ +++
Sbjct: 196 NSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNEI 243
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 34.3 bits (75), Expect = 0.002
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 12 IKLFVLDEADEMLSRGFKDQIHDVFTML-SADVQVILLSATMPDDV 146
++ V+DEAD +L GF+D++ + +L S + Q +L SAT V
Sbjct: 237 LRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKV 282
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 34.3 bits (75), Expect = 0.002
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 12 IKLFVLDEADEMLSRGFKDQI-HDVFTMLSADVQVILLSATMPDDVLEV 155
++ FV+DEAD + GF +Q H + S+++ L SAT+P V E+
Sbjct: 190 VEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEEL 238
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 33.1 bits (72), Expect = 0.005
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 21 FVLDEADEMLSRGFKDQIHDVF-TMLSADVQVILLSATMPDDVLEV 155
F+LDEAD ++ GF + I ++ + + + + SATMP V V
Sbjct: 192 FILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVSNV 237
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 32.7 bits (71), Expect = 0.007
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 21 FVLDEADEMLSRGFKDQIHDVFTMLSADVQVILLSATMP 137
FV+DEAD++LS F I + + + Q+ L SAT P
Sbjct: 190 FVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFP 228
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 32.7 bits (71), Expect = 0.007
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +3
Query: 6 STIKLFVLDEADEMLSRGFKDQIHDVFT-----MLSADVQVILLSATMPDDV 146
S + VLDEAD ML GF+ I ++ + + Q + SAT P+ V
Sbjct: 308 SQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESV 359
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 30.7 bits (66), Expect = 0.027
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 12 IKLFVLDEADEMLSRGFKDQIHDVFTMLSADVQVILLSATMPDDV 146
+K ++DEAD +L F I + ++ + + +L SATM V
Sbjct: 190 LKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKV 234
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 29.9 bits (64), Expect = 0.047
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 24 VLDEADEMLSRGFKDQIHDVFTML 95
V+DEAD ML GF+D ++ + + L
Sbjct: 404 VMDEADRMLDMGFEDDVNKILSSL 427
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 29.5 bits (63), Expect = 0.063
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +3
Query: 6 STIKLFVLDEADEMLSRGFKDQIHDVFTMLSADVQVILLSATMP 137
S ++ VLDE D ++ GF++ + + + L + +I ++P
Sbjct: 293 SQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIP 336
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 28.7 bits (61), Expect = 0.11
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 39 DEMLSRGFKDQIHDVFTMLSADVQVILLSATMPDDVL 149
+EMLS +H V+T S + + LS+T P+ +L
Sbjct: 299 EEMLSPSSLYTLHQVYTATSESINIKTLSSTTPEYIL 335
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 26.6 bits (56), Expect = 0.44
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 12 IKLFVLDEADEMLSRGFKDQIHDVFTMLS 98
++ V+DEAD +L + F+D + V +S
Sbjct: 286 LRYMVIDEADRLLDQSFQDWVDTVMMEIS 314
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 26.2 bits (55), Expect = 0.58
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 107 NISRQHRENIMDLIFESSR 51
NI + HRE+I+D+ ES R
Sbjct: 574 NIGKLHREHILDMAVESER 592
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 25.0 bits (52), Expect = 1.3
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +3
Query: 12 IKLFVLDEADEMLSRGFKDQIHDVFTMLSADV----QVILLSATMPD 140
IK VLDEAD +L + +++ + +L + Q + SAT +
Sbjct: 269 IKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDE 315
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 1.3
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -2
Query: 127 AESKIT*TSADNIVKTSWI*SLNPLDNISSASSSTKS 17
+ SK + S+ + TS I +LNP +ISS SSS+ +
Sbjct: 329 SSSKSSHDSSQGLESTSSI-ALNPTSSISSTSSSSST 364
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.0 bits (52), Expect = 1.3
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 3 ASTIKLFVLDEADEM 47
AST K+ +LDEAD M
Sbjct: 118 ASTFKMIILDEADAM 132
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 24.2 bits (50), Expect = 2.4
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 148 NTSSGIVAESKIT*TSADNIVKTSWI*S--LNPLDNISSASSST 23
NT+SG+ S T +S +IV TS S N + ++S+ST
Sbjct: 657 NTTSGLPTSSASTPSSNSSIVPTSTFTSSGFNTTSGLPTSSAST 700
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 78 DVFTMLSADVQVILLSATMPD 140
+V ML V +ILLSAT+P+
Sbjct: 409 EVIIMLPPHVTLILLSATVPN 429
>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 609
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 24 VLDEADEMLSRGFKDQIHDVFTML 95
+LDE+ E+ + GF DQ+ + +L
Sbjct: 221 LLDESGEIRATGFNDQVDAFYDIL 244
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 23.4 bits (48), Expect = 4.1
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -2
Query: 142 SSGIVAESKIT*TSADNIVKTSWI*SLNPLDNISSASSSTKSLMVLA 2
S+G V+ + T++ SW S + N SS+SSS+ V++
Sbjct: 142 STGSVSGGSVYPTNSTTNSSISWNSSTSAATNTSSSSSSSSQSSVVS 188
>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
Hat1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 52 LEDSKIKSMMFSRCCLLMF 108
+ ++K+ FSRCC L F
Sbjct: 280 IAETKLTQRQFSRCCELAF 298
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 23.4 bits (48), Expect = 4.1
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +1
Query: 94 CLLMFRLFYFLLQCLMMYWK 153
CLL F +F+ + +++YW+
Sbjct: 165 CLLSFGGLFFVSRIVVLYWR 184
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +3
Query: 24 VLDEADEMLSRGFKD----QIHDVFTMLSADVQVILLSATMPDDV 146
++ A E L + FK +I DVF + +++ ++ +S + PD +
Sbjct: 94 IILNAFEYLIKEFKKDVFLKISDVFVCVYSNLNILYISRSFPDQI 138
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 94 NIVKTSWI*SLNPLDNISSASSSTKSLM 11
N T+W+ NPL + SS+ SLM
Sbjct: 328 NTRTTTWVDPRNPLVRPNGGSSTVGSLM 355
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 22.2 bits (45), Expect = 9.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 152 FQYIIRHCSRK*NNLNISRQHRENIMD 72
FQ I++H S N L R+H N +D
Sbjct: 144 FQAILKHPSFVSNPLETVREHLGNSLD 170
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 45 MLSRGFKDQIHDVFTM 92
+LS GFK I D +TM
Sbjct: 1025 VLSSGFKKSIEDSYTM 1040
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 557,780
Number of Sequences: 5004
Number of extensions: 7026
Number of successful extensions: 51
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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