Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L09
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   130   1e-31
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    26   3.2  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    25   5.6  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   5.6  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    21   9.2  
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...    24   9.8  
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...    24   9.8  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    24   9.8  
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...    24   9.8  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  130 bits (313), Expect = 1e-31
 Identities = 59/79 (74%), Positives = 71/79 (89%)
 Frame = +3

Query: 225 KEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTR 404
           KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQKQTR
Sbjct: 32  KEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTR 90

Query: 405 AGQRTRFKA*VAIGDNNGH 461
           AGQRTRFKA V IGD++GH
Sbjct: 91  AGQRTRFKAFVVIGDSDGH 109


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -3

Query: 364 SLSEGPRKKSMISNSLMGRENR*MLSSLSILPSRTRRPSLVTGTHSFGFLAT 209
           +L EG    ++ SNS++   N   L  L++    T   S ++ +H+  +LAT
Sbjct: 441 NLREGTPILAVASNSIVSMYNAISLQQLAVFMRHTAPVSALSFSHNGRYLAT 492


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 8   SWSYRGGGALNYGSRAENRHEGLLLVVHMADALRRW 115
           +W Y     +N  + A+NR  GLL  ++    L+RW
Sbjct: 519 TWQYLPDPNVNKVTSADNRMLGLLSYLYFNCNLQRW 554


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +2

Query: 155 DEVVAATWSWSRTRARRGRGKETKR---VGASHQAWSPCP*RQNRQA*EHLPIL 307
           DEV++   +    R+ RGR    KR    G+S    +  P   ++++ +HLP+L
Sbjct: 208 DEVISEKDTSLSRRSSRGRSSAPKRRKDSGSSKTTATYIPHNPSKKSSQHLPLL 261


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 21.4 bits (43), Expect(2) = 9.2
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 272 AFTDKATKLGDWHPLFWF 219
           AFT  AT  GD  P F F
Sbjct: 318 AFTKPATSTGDNKPTFSF 335



 Score = 21.0 bits (42), Expect(2) = 9.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 140 KAAAETATSTGGVRPPCERQAVDPRADSQPG 48
           K A +T TST    P    +  DP A  +PG
Sbjct: 376 KPATDTTTSTSKTGPLFGNKPADPSA--KPG 404


>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 143 SKAAAETATSTGGVRPP 93
           SKAA + A +TGGV+ P
Sbjct: 23  SKAARKAAPATGGVKKP 39


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 143 SKAAAETATSTGGVRPP 93
           SKAA + A +TGGV+ P
Sbjct: 23  SKAARKAAPATGGVKKP 39


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -1

Query: 300 GKCSQACRFCLHGQGDQAW 244
           G CSQ    C   QGD  W
Sbjct: 271 GSCSQYFPLCTISQGDDLW 289


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 143 SKAAAETATSTGGVRPP 93
           SKAA + A +TGGV+ P
Sbjct: 23  SKAARKAAPATGGVKKP 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,641,878
Number of Sequences: 5004
Number of extensions: 28180
Number of successful extensions: 91
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)