Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_L09
(462 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 119 1e-27
07_01_0756 + 5819367-5820038,5820847-5821005 114 3e-26
07_03_0295 - 16345592-16345947,16346265-16346697 30 1.0
11_02_0077 - 8073139-8073168,8073419-8073751 29 1.4
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 29 2.4
11_01_0395 + 2999855-2999920,3000605-3002191 28 4.2
04_03_0455 - 16085401-16085775 27 5.6
02_01_0479 + 3453989-3454092,3454674-3454706,3454757-3454853,345... 27 5.6
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400... 27 7.3
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497... 27 7.3
01_06_0183 - 27268190-27268281,27268454-27268478,27268568-272686... 27 7.3
08_01_0824 - 8000829-8001272 27 9.7
02_05_0590 + 30177711-30178133,30178761-30179120,30179576-30180004 27 9.7
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 119 bits (287), Expect = 1e-27
Identities = 54/82 (65%), Positives = 68/82 (82%)
Frame = +3
Query: 216 RKPKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQK 395
++ ++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I++ + P L DEV+KI PVQK
Sbjct: 39 QEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQK 97
Query: 396 QTRAGQRTRFKA*VAIGDNNGH 461
QTRAGQRTRFKA V +GDNNGH
Sbjct: 98 QTRAGQRTRFKAFVVVGDNNGH 119
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 114 bits (275), Expect = 3e-26
Identities = 53/82 (64%), Positives = 67/82 (81%)
Frame = +3
Query: 216 RKPKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQK 395
++ ++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++ + P L DEV+KI PVQK
Sbjct: 42 QEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQK 100
Query: 396 QTRAGQRTRFKA*VAIGDNNGH 461
QTRAGQRTRFKA V +GD +GH
Sbjct: 101 QTRAGQRTRFKAFVVVGDGDGH 122
>07_03_0295 - 16345592-16345947,16346265-16346697
Length = 262
Score = 29.9 bits (64), Expect = 1.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 183 HDHVAATTSSHHGIQSRRGN 124
H H ATT HH ++RRGN
Sbjct: 243 HGHACATTCRHHSPKARRGN 262
>11_02_0077 - 8073139-8073168,8073419-8073751
Length = 120
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 110 RWTWRFPRRLWIPWCDEVVAATWSWSRTRARRGRGKETKRVG 235
R W R+W W E+V +W WS T R G G++ VG
Sbjct: 11 RIRWVKGCRIW--WLRELVVGSWHWSFT-CRVGAGRKAIAVG 49
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 360 NDEVLKIMPVQKQTRAGQRTRFKA*VAIGDNNGH 461
++ V+++ V K + G++ F+A V +GD GH
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGH 204
>11_01_0395 + 2999855-2999920,3000605-3002191
Length = 550
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 300 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 419
+F +++ ++IDF L L D + I+P+ R G++T
Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276
>04_03_0455 - 16085401-16085775
Length = 124
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +2
Query: 176 WSW-SRTRARRGRGKETKRVGASHQAWSPCP 265
W W R RA G G E A+H A +PCP
Sbjct: 3 WLWVRRRRATAGVGGEGGGEEAAHPAAAPCP 33
>02_01_0479 +
3453989-3454092,3454674-3454706,3454757-3454853,
3455023-3455081,3455545-3455619,3455726-3455798,
3455927-3456047,3456357-3456444,3456546-3456671,
3456771-3456880,3457004-3457152
Length = 344
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = -1
Query: 267 HGQGDQAW*LAPTLLVSLPRPRRARVRDHDHVAATTSSHHGIQSRRGNR 121
+G GD+ TL+ + P++ + D+ + +HHG+Q + G +
Sbjct: 60 NGNGDEG----NTLVAAECGPKKVQHPDYKDILRVQDTHHGVQQKTGEK 104
>11_01_0515 +
4003167-4003229,4003318-4003738,4004224-4004367,
4004474-4004556,4004661-4004775,4005309-4005400,
4005558-4005612,4005689-4005834,4005888-4006001,
4006149-4006342,4006985-4007112,4008526-4008583,
4009800-4009876,4010214-4010263,4010336-4010515,
4010633-4010731,4010816-4011133,4011221-4011281,
4011693-4012781,4012951-4013005,4013133-4013291,
4013923-4014442
Length = 1406
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 225 KEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLG 350
KE +P G V G+ +++ + SLPIK++ + FF G
Sbjct: 808 KEVIPQEYCGLEVLSGEAAWSKNVLVPSLPIKKYPVHSFFSG 849
>07_03_0493 +
18747427-18748356,18748594-18748697,18749586-18749795,
18749992-18750597,18750819-18751095,18751163-18751310,
18751957-18752044,18752167-18752284
Length = 826
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 219 SLPRPRRARVRDHDHVAATTS 157
+LP+P R R+ H+H A TTS
Sbjct: 395 TLPKPVRPRLPKHEHEAYTTS 415
>01_06_0183 -
27268190-27268281,27268454-27268478,27268568-27268621,
27268688-27268747,27269166-27269300,27270106-27270213,
27270330-27270458,27270845-27270905,27271081-27271112,
27271161-27271289
Length = 274
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -2
Query: 284 LVDFAFTDKATKLGDWHPLFWFP 216
L D +K LG W PL W P
Sbjct: 32 LADVGDPEKPAVLGKWKPLLWIP 54
>08_01_0824 - 8000829-8001272
Length = 147
Score = 26.6 bits (56), Expect = 9.7
Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Frame = +2
Query: 74 LLLVVHMADALRRWTWRFPRRLW----IPWCDEVVAA---TWSW----SRTRARRGRGKE 220
+L V +AD RR +WR RRLW EVV A SW SRTR RR R +
Sbjct: 85 VLAEVAVADE-RRHSWRRRRRLWRRGGARGRAEVVVAGKRRRSWRRRRSRTRQRRRRSRR 143
Query: 221 TKR 229
+R
Sbjct: 144 RRR 146
>02_05_0590 + 30177711-30178133,30178761-30179120,30179576-30180004
Length = 403
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 137 AAAETATSTGGVRPPCERQAVDPRAD 60
AAAET T TGG P E+ AD
Sbjct: 377 AAAETTTPTGGALPQAEQSKESNGAD 402
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,122,159
Number of Sequences: 37544
Number of extensions: 245439
Number of successful extensions: 890
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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