Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L09
         (462 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   115   1e-26
Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical pr...    27   4.9  
U70852-15|AAK29824.1|  543|Caenorhabditis elegans Hypothetical p...    27   4.9  
AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical...    27   4.9  
AF039710-6|AAB96688.1|  392|Caenorhabditis elegans Hypothetical ...    27   6.5  
AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical ...    27   6.5  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  115 bits (277), Expect = 1e-26
 Identities = 61/81 (75%), Positives = 64/81 (79%)
 Frame = +3

Query: 219 KPKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 398
           K  EW PVTKLGRLV+E KI  LE IYL SLPIKEFEIID  L  +L DEVLKI PVQKQ
Sbjct: 53  KETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIID-ALCSNLKDEVLKISPVQKQ 111

Query: 399 TRAGQRTRFKA*VAIGDNNGH 461
           T AGQRTRFKA VAIGD+ GH
Sbjct: 112 TTAGQRTRFKAFVAIGDHAGH 132


>Z81465-4|CAB03866.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -3

Query: 421 RVR*PARVCFCTGMIFRTSSLS-EGPRKKSMISNSLMGRENR*MLSSLSILPSRTRRPSL 245
           R R P  +   T    R+SS+    P   S +S  +  R       + S+ PSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581

Query: 244 VTGT 233
            + T
Sbjct: 582 QSNT 585


>Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical
           protein F58G11.2 protein.
          Length = 960

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 207 AVARKPKEWVPVTK-LGRLVRE 269
           A  R P++WVPVT+ +  LVRE
Sbjct: 332 APVRAPRDWVPVTRDIDELVRE 353


>U70852-15|AAK29824.1|  543|Caenorhabditis elegans Hypothetical
           protein F45E4.11 protein.
          Length = 543

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -1

Query: 276 FCLHGQGDQAW*LAPTLLVSLPRPRRARVRD--HDHVAATTSSHHGIQSR 133
           F + G  D+ W  AP+   S+    R  +RD   +   AT+S+  G QSR
Sbjct: 489 FTIWGSADREWWAAPSSKCSVASFHRPSIRDRSREMSRATSSTSLGQQSR 538


>AL032646-13|CAA21687.3|  613|Caenorhabditis elegans Hypothetical
           protein Y54E2A.1 protein.
          Length = 613

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -3

Query: 421 RVR*PARVCFCTGMIFRTSSLS-EGPRKKSMISNSLMGRENR*MLSSLSILPSRTRRPSL 245
           R R P  +   T    R+SS+    P   S +S  +  R       + S+ PSRTR P+L
Sbjct: 522 RPRSPTDLSQSTKPSRRSSSIRPRSPTSTSQMSTIVRSRSPTGASDTSSLFPSRTRSPTL 581

Query: 244 VTGT 233
            + T
Sbjct: 582 QSNT 585


>AF039710-6|AAB96688.1|  392|Caenorhabditis elegans Hypothetical
           protein C46E10.3 protein.
          Length = 392

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +3

Query: 204 VAVARKPKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEV 371
           +A++  P   +P T L ++    K+       + SLP+ E     F   PSL D++
Sbjct: 240 LAISSLPSTSIPATILPKIDNLAKVPSFAPFQISSLPLSE----PFLRSPSLQDDL 291


>AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical
           protein C17A2.5 protein.
          Length = 731

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
 Frame = +2

Query: 47  SRAENRHEGLLLVVHMADALRRWTWRFPRRLWIPWCDEVVAATWSW-SRTRARRGRGK 217
           SR EN +               W     + LW+P+CD   +    W + T    G GK
Sbjct: 444 SRIENNNNKTKSTEDAIKMNHLWDLNDRKSLWVPYCDYEASRPLGWCNHTSLEPGPGK 501


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,243,376
Number of Sequences: 27780
Number of extensions: 162338
Number of successful extensions: 478
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)