Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_L08
(269 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 96 9e-22
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 90 6e-20
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 48 2e-07
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 37 4e-04
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual 24 3.2
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 3.2
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 24 4.3
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 24 4.3
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ... 23 5.7
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 23 7.5
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 23 7.5
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 23 9.9
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 23 9.9
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 95.9 bits (228), Expect = 9e-22
Identities = 41/59 (69%), Positives = 45/59 (76%)
Frame = +2
Query: 92 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGGDDSFNTFFSETGAG 268
MRE IS+H+GQAG QIGNACWELYCLEHGIQP+G M E D F+TFFSETG G
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQG 59
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 89.8 bits (213), Expect = 6e-20
Identities = 45/64 (70%), Positives = 47/64 (73%), Gaps = 5/64 (7%)
Frame = +2
Query: 92 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTE-----KTLGGGDDSFNTFFSE 256
MRE ISVH+GQAGVQIGNACWELYCLEHGI PDG PTE K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 257 TGAG 268
TG G
Sbjct: 60 TGQG 63
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 48.4 bits (110), Expect = 2e-07
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +2
Query: 95 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGGDDSFNTFFSET 259
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQS 55
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 37.1 bits (82), Expect = 4e-04
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +2
Query: 92 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGGDDSFNTFFSETGAG 268
MRE + + GQ G Q+G A W EHG+ G T + N +F+E G
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGG 57
>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 24.2 bits (50), Expect = 3.2
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -3
Query: 183 WIPCSRQYSSQHALPI*TPACPMCTEMHSLIL 88
W P H +PI TPA P H++ L
Sbjct: 286 WNPKLYPSDKAHRMPIITPAYPSMCATHNITL 317
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 24.2 bits (50), Expect = 3.2
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -3
Query: 267 PAPVSLKNVLKESSPPPSVFSVGICPSGWIPCSRQYSSQHALPI*TPACPM 115
P P NV+ + PPPS S G S + Y++ LP + P+
Sbjct: 139 PPPPVRPNVMSQMPPPPSYSSSG-SYSQTYQSNANYTASSPLPTASANAPL 188
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 23.8 bits (49), Expect = 4.3
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +3
Query: 96 GNASQYTSGKPEFRSATHAGSCTASSMVSSLMDRCP 203
GNAS TS K H + ASS +SL P
Sbjct: 267 GNASSSTSAKRRRPDHNHTSTLDASSSNTSLASTGP 302
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 23.8 bits (49), Expect = 4.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 202 GHLSIRLDTMLEAVQLPACVADLNSGLP 119
G +++ LD E +P CVADL LP
Sbjct: 10 GRVNVFLDP--ETKDIPKCVADLKFPLP 35
>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 282
Score = 23.4 bits (48), Expect = 5.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 265 STGLTKECIEGVI 227
S G TKECI+G+I
Sbjct: 117 SMGQTKECIQGLI 129
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 23.0 bits (47), Expect = 7.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 268 TSTGLTKECIEGVIPAAQRLLRGH 197
TS +++ C EGVI A + R H
Sbjct: 317 TSASISQPCSEGVIYALKACYRKH 340
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 23.0 bits (47), Expect = 7.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 26 PATPHALHITTAFCKLSSTYTK 91
PA+PH L K + TYTK
Sbjct: 388 PASPHTLKSVKDDLKRTKTYTK 409
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 22.6 bits (46), Expect = 9.9
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -3
Query: 204 VGICPSGWIPCSRQYSS 154
+GIC G+ PC Y S
Sbjct: 142 LGICEGGFFPCLSLYIS 158
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 22.6 bits (46), Expect = 9.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -2
Query: 268 TSTGLTKECIEGVIPAAQRLLRGHLSIRLDTMLEAVQLPACV--ADLNSGLPDVY 110
+STG C+ G++ + G L I+ D Q CV AD S +P+VY
Sbjct: 43 SSTGEVTRCVCGIVESDDEASDGGLYIQCD-QCSVWQHGNCVGFAD-ESEVPEVY 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,252,078
Number of Sequences: 5004
Number of extensions: 23843
Number of successful extensions: 72
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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