Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_L08
(269 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 121 6e-29
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 121 6e-29
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 121 6e-29
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 119 2e-28
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 104 7e-24
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 103 2e-23
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 103 2e-23
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 101 7e-23
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 101 9e-23
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 101 9e-23
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 100 3e-22
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 100 3e-22
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 89 3e-19
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 87 2e-18
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 73 2e-14
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 48 7e-07
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 48 1e-06
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 47 2e-06
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 46 4e-06
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 46 4e-06
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 45 8e-06
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 42 6e-05
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 42 6e-05
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 42 8e-05
Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical p... 36 0.005
AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin... 36 0.005
Z47356-6|CAA87419.1| 554|Caenorhabditis elegans Hypothetical pr... 29 0.34
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 28 0.79
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 28 0.79
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 28 0.79
AL021474-2|CAA16309.3| 655|Caenorhabditis elegans Hypothetical ... 27 1.8
Z50070-12|CAA90398.2| 554|Caenorhabditis elegans Hypothetical p... 27 2.4
AL032651-3|CAB60582.1| 554|Caenorhabditis elegans Hypothetical ... 27 2.4
U23484-17|AAK68296.1| 367|Caenorhabditis elegans Tudor domain p... 26 3.2
AF303251-1|AAG50209.1| 367|Caenorhabditis elegans 2F713 protein. 26 3.2
U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug resis... 26 4.2
Z81134-7|CAD56602.1| 879|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z81134-6|CAB03450.2| 795|Caenorhabditis elegans Hypothetical pr... 25 5.6
L16560-4|AAA27997.1| 111|Caenorhabditis elegans Hypothetical pr... 25 5.6
AL117202-32|CAD56611.1| 879|Caenorhabditis elegans Hypothetical... 25 5.6
AL117202-31|CAD56610.1| 795|Caenorhabditis elegans Hypothetical... 25 5.6
AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical ... 25 5.6
AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear recep... 25 5.6
AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear recep... 25 5.6
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 25 7.3
U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical pr... 25 7.3
U58755-1|AAB00691.3| 403|Caenorhabditis elegans Nematode astaci... 25 9.7
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 121 bits (292), Expect = 6e-29
Identities = 51/59 (86%), Positives = 57/59 (96%)
Frame = +2
Query: 92 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGGDDSFNTFFSETGAG 268
MRE IS+HIGQAGVQIGNACWELYCLEHGIQPDGQMP++K+LGG DDSF+TFFSETG+G
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSG 59
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 121 bits (292), Expect = 6e-29
Identities = 51/59 (86%), Positives = 57/59 (96%)
Frame = +2
Query: 92 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGGDDSFNTFFSETGAG 268
MRE IS+HIGQAGVQIGNACWELYCLEHGIQPDGQMP++K+LGG DDSF+TFFSETG+G
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSG 59
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 121 bits (292), Expect = 6e-29
Identities = 51/59 (86%), Positives = 57/59 (96%)
Frame = +2
Query: 92 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGGDDSFNTFFSETGAG 268
MRE IS+HIGQAGVQIGNACWELYCLEHGIQPDGQMP++K+LGG DDSF+TFFSETG+G
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSG 59
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 119 bits (287), Expect = 2e-28
Identities = 50/58 (86%), Positives = 56/58 (96%)
Frame = +2
Query: 95 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGGDDSFNTFFSETGAG 268
RE IS+HIGQAGVQIGNACWELYCLEHGIQPDGQMP++K+LGG DDSF+TFFSETG+G
Sbjct: 1 REVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSG 58
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 104 bits (250), Expect = 7e-24
Identities = 45/60 (75%), Positives = 51/60 (85%)
Frame = +2
Query: 89 KMRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGGDDSFNTFFSETGAG 268
+ RE IS+H+GQAGVQ+GNACWELYCLEHGIQPDG + E +LG DDSFNTFFSET AG
Sbjct: 5 RSREVISIHVGQAGVQMGNACWELYCLEHGIQPDGMINEEDSLGVDDDSFNTFFSETMAG 64
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 103 bits (246), Expect = 2e-23
Identities = 45/59 (76%), Positives = 51/59 (86%)
Frame = +2
Query: 92 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGGDDSFNTFFSETGAG 268
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDG MPT+ T G +SF TFFS+TG+G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG--ESFTTFFSDTGSG 57
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 103 bits (246), Expect = 2e-23
Identities = 45/59 (76%), Positives = 51/59 (86%)
Frame = +2
Query: 92 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGGDDSFNTFFSETGAG 268
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDG MPT+ T G +SF TFFS+TG+G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG--ESFTTFFSDTGSG 57
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 101 bits (242), Expect = 7e-23
Identities = 43/59 (72%), Positives = 49/59 (83%)
Frame = +2
Query: 92 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGGDDSFNTFFSETGAG 268
MRE +S+HIGQAGVQIGNACWELYCLEHGI PDG MP + + G D S+NTFFSET +G
Sbjct: 1 MREIVSIHIGQAGVQIGNACWELYCLEHGITPDGLMPDDTSYGVEDQSYNTFFSETPSG 59
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 101 bits (241), Expect = 9e-23
Identities = 45/59 (76%), Positives = 50/59 (84%)
Frame = +2
Query: 92 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGGDDSFNTFFSETGAG 268
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDG MP+E+ GG SF TFFS+TG G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGG--SFTTFFSDTGNG 57
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 101 bits (241), Expect = 9e-23
Identities = 45/59 (76%), Positives = 50/59 (84%)
Frame = +2
Query: 92 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGGDDSFNTFFSETGAG 268
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDG MP+E+ GG SF TFFS+TG G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGG--SFTTFFSDTGNG 57
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 99.5 bits (237), Expect = 3e-22
Identities = 43/59 (72%), Positives = 50/59 (84%)
Frame = +2
Query: 92 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGGDDSFNTFFSETGAG 268
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDG MP+++ G +SF TFFS+TG G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADG--ESFTTFFSDTGNG 57
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 99.5 bits (237), Expect = 3e-22
Identities = 43/59 (72%), Positives = 50/59 (84%)
Frame = +2
Query: 92 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGGDDSFNTFFSETGAG 268
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDG MP+++ G +SF TFFS+TG G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADG--ESFTTFFSDTGNG 57
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 89.4 bits (212), Expect = 3e-19
Identities = 38/62 (61%), Positives = 45/62 (72%)
Frame = +2
Query: 83 YTKMRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGGDDSFNTFFSETG 262
Y RE IS+H+GQAGVQIGNACWEL+CLEHGIQPDG + T ++ NTFF+ET
Sbjct: 4 YKGSREVISIHVGQAGVQIGNACWELFCLEHGIQPDGYHVEDDTYDEETETINTFFAETA 63
Query: 263 AG 268
G
Sbjct: 64 GG 65
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 87.0 bits (206), Expect = 2e-18
Identities = 40/59 (67%), Positives = 43/59 (72%)
Frame = +2
Query: 92 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGGDDSFNTFFSETGAG 268
MRE IS+H+GQAGVQIGNACWELYCLEHGI PDG T G S TFFS+TG G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGILPDG---TSMEPDGNSGSLGTFFSDTGYG 56
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 73.3 bits (172), Expect = 2e-14
Identities = 32/58 (55%), Positives = 39/58 (67%)
Frame = +2
Query: 95 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGGDDSFNTFFSETGAG 268
REC+S+HIGQAG QIGNACWELYC+EHG+ G + E+ S FFSE+ G
Sbjct: 6 RECVSIHIGQAGAQIGNACWELYCIEHGLDEAGFLKEEEK-NKKQQSLQAFFSESMNG 62
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 48.4 bits (110), Expect = 7e-07
Identities = 25/59 (42%), Positives = 31/59 (52%)
Frame = +2
Query: 92 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGGDDSFNTFFSETGAG 268
MRE + V GQ G QIG WE+ EHGIQPDG E L + N +++E G
Sbjct: 1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIQPDGTYKGESDL--QLERINVYYNEANGG 57
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 47.6 bits (108), Expect = 1e-06
Identities = 22/42 (52%), Positives = 25/42 (59%)
Frame = +2
Query: 92 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTL 217
MRE + V GQ G QIG+ WE+ EHGIQPDG E L
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGESDL 42
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 47.2 bits (107), Expect = 2e-06
Identities = 22/42 (52%), Positives = 25/42 (59%)
Frame = +2
Query: 92 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTL 217
MRE + V GQ G QIG+ WE+ EHGIQPDG E L
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGETDL 42
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 46.0 bits (104), Expect = 4e-06
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +2
Query: 92 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGGDDSFNTFFSETGA 265
MRE + + GQ G QIG+ WE+ EHGI P GQ + L + N +++E G+
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDL--QLERINVYYNEAGS 56
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 46.0 bits (104), Expect = 4e-06
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +2
Query: 92 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGGDDSFNTFFSETGA 265
MRE + + GQ G QIG+ WE+ EHGI P GQ + L + N +++E G+
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDL--QLERINVYYNEAGS 56
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 44.8 bits (101), Expect = 8e-06
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +2
Query: 158 LYCLEHGIQPDGQMPTEKTLGGGDDSFNTFFSETGAG 268
++CLEHGIQPDG + T ++ NTFF+ET G
Sbjct: 1 MFCLEHGIQPDGYHVEDDTYDEETETINTFFAETAGG 37
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 41.9 bits (94), Expect = 6e-05
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +2
Query: 92 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDG 193
M+E I+V +GQ G QIG WE EHG+Q DG
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDG 34
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 41.9 bits (94), Expect = 6e-05
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +2
Query: 92 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDG 193
M+E I+V +GQ G QIG WE EHG+Q DG
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDG 34
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 41.5 bits (93), Expect = 8e-05
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +2
Query: 92 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGGDDSFNTFFSETGAG 268
MRE + + GQ G QIG WE+ EHGI P G + L + N +++E G
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGAYNGDSDL--QLERINVYYNEASGG 57
>Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical
protein F58A4.8 protein.
Length = 444
Score = 35.5 bits (78), Expect = 0.005
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 104 ISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGGDD 232
++VH+GQ G Q+ A W+ EHGI GQ E + D
Sbjct: 8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDMNDKKD 50
>AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin
protein.
Length = 444
Score = 35.5 bits (78), Expect = 0.005
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 104 ISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGGDD 232
++VH+GQ G Q+ A W+ EHGI GQ E + D
Sbjct: 8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDMNDKKD 50
>Z47356-6|CAA87419.1| 554|Caenorhabditis elegans Hypothetical
protein T15H9.6 protein.
Length = 554
Score = 29.5 bits (63), Expect = 0.34
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -3
Query: 183 WIPCSRQYSSQHALPI*TPACPMCTEMHSL---ILVYVEDNLQKAVVI 49
W P H +PI TPA P H++ + ++D ++KA++I
Sbjct: 298 WDPRRNHADRYHLMPIITPAFPQQNSTHNVSRSSMKVIQDEMKKALII 345
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 28.3 bits (60), Expect = 0.79
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +2
Query: 59 AFCKLSSTYTKMRECIS----VHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGG 226
AF + + TK +CI+ ++ + QI +C CL +G++P G P + + G
Sbjct: 34 AFFRRTVALTKSFKCITGRDDCNVHYSMHQICRSCRHKKCLSNGMKPGGVQPKKPNIETG 93
Query: 227 DDSFNTFFSETG 262
FF+++G
Sbjct: 94 ----RAFFTKSG 101
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 28.3 bits (60), Expect = 0.79
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +2
Query: 59 AFCKLSSTYTKMRECIS----VHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGG 226
AF + + TK +CI+ ++ + QI +C CL +G++P G P + + G
Sbjct: 52 AFFRRTVALTKSFKCITGRDDCNVHYSMHQICRSCRHKKCLSNGMKPGGVQPKKPNIETG 111
Query: 227 DDSFNTFFSETG 262
FF+++G
Sbjct: 112 ----RAFFTKSG 119
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 28.3 bits (60), Expect = 0.79
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +2
Query: 59 AFCKLSSTYTKMRECIS----VHIGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLGGG 226
AF + + TK +CI+ ++ + QI +C CL +G++P G P + + G
Sbjct: 34 AFFRRTVALTKSFKCITGRDDCNVHYSMHQICRSCRHKKCLSNGMKPGGVQPKKPNIETG 93
Query: 227 DDSFNTFFSETG 262
FF+++G
Sbjct: 94 ----RAFFTKSG 101
>AL021474-2|CAA16309.3| 655|Caenorhabditis elegans Hypothetical
protein Y32F6A.3 protein.
Length = 655
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = -3
Query: 267 PAPVSLKNVLKESSPPPSVFSVGICPSGWIPCSRQYSSQHALPI*TPACPMCTEMHSL 94
P PV L + + + P+ +C W P + H +PI TPA P H++
Sbjct: 273 PHPVVLNEMNNDRNDIPT-----LCELVWDPRRKNTDRFHVMPIITPAFPEQNSTHNV 325
>Z50070-12|CAA90398.2| 554|Caenorhabditis elegans Hypothetical
protein F43G6.5 protein.
Length = 554
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = -3
Query: 183 WIPCSRQYSSQHALPI*TPACPMCTEMHSL---ILVYVEDNLQKAVVIWSACGVAGSQCN 13
W P Q H +PI TPA P H++ + +++ ++ A++ + + CN
Sbjct: 303 WDPRRNQSDRYHLMPIVTPAFPQQNSTHNVSRSSMKVIQEEMKDALI--TCDNIQNGSCN 360
>AL032651-3|CAB60582.1| 554|Caenorhabditis elegans Hypothetical
protein F43G6.5 protein.
Length = 554
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = -3
Query: 183 WIPCSRQYSSQHALPI*TPACPMCTEMHSL---ILVYVEDNLQKAVVIWSACGVAGSQCN 13
W P Q H +PI TPA P H++ + +++ ++ A++ + + CN
Sbjct: 303 WDPRRNQSDRYHLMPIVTPAFPQQNSTHNVSRSSMKVIQEEMKDALI--TCDNIQNGSCN 360
>U23484-17|AAK68296.1| 367|Caenorhabditis elegans Tudor domain plus
rrm motif protein1 protein.
Length = 367
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/67 (22%), Positives = 32/67 (47%)
Frame = -3
Query: 261 PVSLKNVLKESSPPPSVFSVGICPSGWIPCSRQYSSQHALPI*TPACPMCTEMHSLILVY 82
P++ +V K S PPS + S W+P ++ + + P+ + ++ +L L+
Sbjct: 99 PMASNSVQKLVSSPPSKSGPVLLSSSWLPLNKDIEVEVVDYL--PSSSVAPDLFALTLLR 156
Query: 81 VEDNLQK 61
+ D+ K
Sbjct: 157 INDSSMK 163
>AF303251-1|AAG50209.1| 367|Caenorhabditis elegans 2F713 protein.
Length = 367
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/67 (22%), Positives = 32/67 (47%)
Frame = -3
Query: 261 PVSLKNVLKESSPPPSVFSVGICPSGWIPCSRQYSSQHALPI*TPACPMCTEMHSLILVY 82
P++ +V K S PPS + S W+P ++ + + P+ + ++ +L L+
Sbjct: 99 PMASNSVQKLVSSPPSKSGPVLLSSSWLPLNKDIEVEVVDYL--PSSSVAPDLFALTLLR 156
Query: 81 VEDNLQK 61
+ D+ K
Sbjct: 157 INDSSMK 163
>U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug resistance
protein familyprotein 6 protein.
Length = 1396
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 65 CKLSSTYTKMRECISVHIGQAGVQIGNACWELYCL 169
C+L + TK + ++V +GQ GV + +L+CL
Sbjct: 1247 CELKRSITKEKG-LNVELGQRGVSLSVGQRQLFCL 1280
>Z81134-7|CAD56602.1| 879|Caenorhabditis elegans Hypothetical
protein T28D6.5b protein.
Length = 879
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 174 CSRQYSSQHALPI*TPACPMCT 109
C R YSS H+ TPA P C+
Sbjct: 94 CMRPYSSPHSPVRPTPAAPDCS 115
>Z81134-6|CAB03450.2| 795|Caenorhabditis elegans Hypothetical
protein T28D6.5a protein.
Length = 795
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 174 CSRQYSSQHALPI*TPACPMCT 109
C R YSS H+ TPA P C+
Sbjct: 94 CMRPYSSPHSPVRPTPAAPDCS 115
>L16560-4|AAA27997.1| 111|Caenorhabditis elegans Hypothetical
protein D2007.1 protein.
Length = 111
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 63 KAVVIWSACGVAGSQCNAPSC 1
KA S CGV SQC+A C
Sbjct: 47 KASASTSRCGVQASQCSAYEC 67
>AL117202-32|CAD56611.1| 879|Caenorhabditis elegans Hypothetical
protein T28D6.5b protein.
Length = 879
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 174 CSRQYSSQHALPI*TPACPMCT 109
C R YSS H+ TPA P C+
Sbjct: 94 CMRPYSSPHSPVRPTPAAPDCS 115
>AL117202-31|CAD56610.1| 795|Caenorhabditis elegans Hypothetical
protein T28D6.5a protein.
Length = 795
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 174 CSRQYSSQHALPI*TPACPMCT 109
C R YSS H+ TPA P C+
Sbjct: 94 CMRPYSSPHSPVRPTPAAPDCS 115
>AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical
protein H01A20.1 protein.
Length = 463
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 116 IGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLG 220
I +AG + +C CLE G++PD P G
Sbjct: 97 IDKAGRNVCRSCRFQKCLEVGMEPDAIRPDRDKTG 131
>AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 116 IGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLG 220
I +AG + +C CLE G++PD P G
Sbjct: 97 IDKAGRNVCRSCRFQKCLEVGMEPDAIRPDRDKTG 131
>AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 116 IGQAGVQIGNACWELYCLEHGIQPDGQMPTEKTLG 220
I +AG + +C CLE G++PD P G
Sbjct: 97 IDKAGRNVCRSCRFQKCLEVGMEPDAIRPDRDKTG 131
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
H02I12.1 protein.
Length = 1319
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -3
Query: 216 SVFSVGICPSGWIPCS 169
+VFS+G+C S ++ CS
Sbjct: 1115 AVFSIGVCSSKYLRCS 1130
>U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical
protein C16B8.3 protein.
Length = 164
Score = 25.0 bits (52), Expect = 7.3
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Frame = -3
Query: 225 PPPSVFSVGICPSGWI----PCSRQ-YSSQHALPI*TPACPMCTEMH 100
PPP G+ PSG++ P Q YS+ + P P P T M+
Sbjct: 65 PPPMGIGAGVNPSGYVQQAPPLPTQGYSAYNQQPPPLPQQPYQTNMY 111
>U58755-1|AAB00691.3| 403|Caenorhabditis elegans Nematode astacin
protease protein 8 protein.
Length = 403
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +3
Query: 21 ANPPRHTRSILRQPFVNYLQH 83
A+PP ++ ++L + +YLQH
Sbjct: 382 ASPPNYSNTLLTKSSTSYLQH 402
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,213,175
Number of Sequences: 27780
Number of extensions: 146760
Number of successful extensions: 474
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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