Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L06
         (247 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    27   0.46 
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    24   3.2  
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    24   3.2  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    24   3.2  
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    23   4.3  
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    23   5.6  
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    23   5.6  
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    23   5.6  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    23   5.6  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    23   7.4  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    23   7.4  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    22   9.8  
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch...    22   9.8  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    22   9.8  

>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 0.46
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 139 HWMQAVYYLPQEVTVHKGN-VASLISCQ 219
           HW Q V+Y  +++TV  G  +   I+C+
Sbjct: 277 HWKQTVFYTHKDLTVKAGEYIRGTITCK 304


>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 94  NISSERPQDTIPWRDHWMQAVYYLPQEVTVHKGNVASLIS 213
           N+S+E    T   ++ W+  +  LP   T H   +AS ++
Sbjct: 217 NLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLA 256


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = +1

Query: 19  WWELNMDPEGKIPLSCAPWWCHPDTNISSERPQDTIPWRDHWMQAVYYLPQEVTVHK 189
           +WE   D E KI   CA  W    + +    PQ T      W +A   + ++   +K
Sbjct: 184 FWE---DAERKIDAQCAILWPMEFSGVVESIPQSTKDLLRIWKEAKIQMHEDFRCNK 237


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 55   PLSCAPWWCHPDTNISSERPQDTI 126
            PLS A  +  P  N++S RP  T+
Sbjct: 933  PLSAAMSYFDPAQNLTSNRPNSTL 956


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 201 FINLMPRRILPL 236
           FINLMP  ++PL
Sbjct: 132 FINLMPEHVIPL 143


>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 238 TKGSIRLGMRLMKQHCLC 185
           TKG+   GMR  K H +C
Sbjct: 2   TKGTQSFGMRHNKSHTIC 19


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 28  LNMDPEGKIPLSCAPWW 78
           LN  PE K+P SC  WW
Sbjct: 215 LNGRPE-KLPDSCYGWW 230


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 238 TKGSIRLGMRLMKQHCLC 185
           TKG+   GMR  K H +C
Sbjct: 2   TKGTQSFGMRHNKSHTIC 19


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 44  KVKFLLVVPHGGVILTQIYPLNAHKTLYRG 133
           +++F L + H   I +  YP++AHK+   G
Sbjct: 442 RIQFCLAL-HNDSIKSMRYPMDAHKSELEG 470


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 198 NIAFVYCHFLR*IVDSLHPMIAPRYSVLWA 109
           +IA     F+R IV  +HP +A      WA
Sbjct: 64  HIALFSVLFIRSIVQMIHPCLALSDPFFWA 93


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +1

Query: 82  HPDTNISSERPQDTIPWR 135
           HPD  +S+E  ++++P++
Sbjct: 125 HPDAIVSTEMVKESVPYK 142


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = +1

Query: 52  IPLSCAPWWCH 84
           IP     WWCH
Sbjct: 219 IPFHPGKWWCH 229


>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 241 RTKGSIRLGMRLMKQHCLCVLSLLEVDSRQLASN 140
           R K  I LG+  +K  C C       ++R   SN
Sbjct: 4   RDKWKIYLGLTTIKVQCPCFFLFHNDENRTTTSN 37


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 54  NFTFRVHIKLPPHEYP 7
           + T R+H  L PH +P
Sbjct: 815 SLTIRLHYPLDPHSHP 830


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,169,008
Number of Sequences: 5004
Number of extensions: 22254
Number of successful extensions: 49
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)