Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_L06
(247 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0038 + 375893-376093,376758-376883,376978-377177,377411-37... 42 7e-05
04_04_1057 - 30451759-30452523,30452627-30452701,30453180-304532... 29 0.39
08_01_0874 + 8575718-8576422,8576603-8576662,8576799-8576945,857... 28 1.2
10_07_0019 + 11931519-11932310 27 2.8
10_01_0129 + 1535823-1537196 27 2.8
03_05_0199 - 21893051-21893509,21893835-21894482,21894566-218948... 27 2.8
12_02_0716 - 22461827-22461920,22462153-22462274,22462383-224624... 26 3.7
02_05_1148 - 34458732-34460627,34462299-34462547 26 3.7
03_05_0483 - 24806984-24808324 25 6.4
11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415 25 8.5
08_01_0724 - 6426263-6426514,6428511-6428742,6429081-6429400,643... 25 8.5
03_06_0513 - 34432798-34433043,34433272-34433436,34433557-344338... 25 8.5
03_06_0511 - 34425605-34425850,34426120-34426284,34426365-344266... 25 8.5
03_02_0352 + 7749902-7751788,7752547-7752615 25 8.5
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 25 8.5
>06_01_0038 +
375893-376093,376758-376883,376978-377177,377411-377502,
377966-378222,378610-378846,378986-379063,380422-380571,
380646-380720,381109-381205,381289-381341
Length = 521
Score = 41.9 bits (94), Expect = 7e-05
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +1
Query: 22 WELNMDPEGKIPLSCAPWWCHPDTNISSERPQ-DTIPWRDHWMQAVYYLP-QEVTVHKGN 195
W L +D G I S AP W SSE PQ D W DHW Q V+++ + + +
Sbjct: 177 WVLQLDSAGSIFYSTAPRWARQS---SSEGPQRDMKDWCDHWKQCVWFMQGKGIPATEDQ 233
Query: 196 VASLISCQDEYSLWFYL 246
V SL + ++ S+ + L
Sbjct: 234 VLSLRARHNQTSISYQL 250
>04_04_1057 -
30451759-30452523,30452627-30452701,30453180-30453254,
30453503-30453591,30454058-30454157,30454244-30454388,
30454609-30454658,30455033-30455114,30455200-30455282,
30455360-30455429,30455523-30455632,30455719-30455872,
30456639-30456796,30457338-30457517
Length = 711
Score = 29.5 bits (63), Expect = 0.39
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 75 PWGTTKRNFTFRVHIKLPPHEYPS 4
P G T +++ R + +PPHEYPS
Sbjct: 593 PLGKTPSSYSKRRGLPMPPHEYPS 616
>08_01_0874 +
8575718-8576422,8576603-8576662,8576799-8576945,
8577390-8577527
Length = 349
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 97 ISSERPQDTIPWRDHWMQAVYYLPQEVTVHKGNVASLISCQDEY 228
+S+ P+D + + ++ ++Y+P T H+ I CQ+EY
Sbjct: 267 VSTGLPEDEL---SNCLKRIHYVPSASTSHEDGDIKCIICQEEY 307
>10_07_0019 + 11931519-11932310
Length = 263
Score = 26.6 bits (56), Expect = 2.8
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +1
Query: 40 PEGKIPLSCAPWWCHPD 90
P +PL C WWC +
Sbjct: 32 PRATLPLRCRRWWCRSE 48
>10_01_0129 + 1535823-1537196
Length = 457
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Frame = +1
Query: 19 WWELNMDPEGKIPLSCAPWWCHPDTN---ISSERPQDTIP 129
WW + EG I +SC W H D +S + D +P
Sbjct: 395 WWAEVVSEEGDILVSCFGWLLHCDNKGNLVSKFQYNDDLP 434
>03_05_0199 -
21893051-21893509,21893835-21894482,21894566-21894888,
21895978-21896116
Length = 522
Score = 26.6 bits (56), Expect = 2.8
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +1
Query: 121 TIPWRDHWMQAVYYLPQEVTVH 186
T+ WR HW +Y Q+ H
Sbjct: 493 TVVWRTHWFWGRFYCNQDADAH 514
>12_02_0716 -
22461827-22461920,22462153-22462274,22462383-22462471,
22462562-22462782,22464252-22464373,22465000-22465088,
22465179-22465389
Length = 315
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 101 DIFVSG*HHHGAQLRGILPSGSILSSHH 18
D+ V G H +GA R +L S S SHH
Sbjct: 271 DMLVVGSHGYGAWKRAVLGSVSDYCSHH 298
>02_05_1148 - 34458732-34460627,34462299-34462547
Length = 714
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 75 PWGTTKRNFTFRVHIKLP 22
P T++RNFT VH+K P
Sbjct: 231 PESTSERNFTVLVHLKAP 248
>03_05_0483 - 24806984-24808324
Length = 446
Score = 25.4 bits (53), Expect = 6.4
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 108 TPTRHYTVARSLDASCLLSTSRSDSTQRQCCFINLMPRRILPLVL 242
+PT S +A L ST R+D+ R + L P R LPL L
Sbjct: 105 SPTPRLAGIHSAEAQVLDST-RADAADRLLRLLMLAPARALPLHL 148
>11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415
Length = 1490
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -1
Query: 181 LSLLEVDSRQLASNDRATV*CLVGVQRIYLCQDD 80
LS L +D ++ + + L+G+Q +YLC ++
Sbjct: 390 LSFLALDLNKITGSIPKDIGNLIGLQHLYLCNNN 423
>08_01_0724 -
6426263-6426514,6428511-6428742,6429081-6429400,
6433071-6433163,6433188-6433354,6433432-6433846
Length = 492
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/39 (23%), Positives = 17/39 (43%)
Frame = +1
Query: 49 KIPLSCAPWWCHPDTNISSERPQDTIPWRDHWMQAVYYL 165
K C + P+ + + P + W +WMQ +Y+
Sbjct: 7 KTVFGCVNFMLRPERSDAWPVPASMVKWEWNWMQKWFYI 45
>03_06_0513 -
34432798-34433043,34433272-34433436,34433557-34433842,
34434972-34435054,34435388-34435495,34435687-34435944,
34436388-34436555,34436865-34437090,34437923-34438035,
34438180-34438548,34439475-34439516,34439576-34439686,
34439883-34440086
Length = 792
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +2
Query: 116 KTLYRGAIIGCKLS 157
KTLY+ AI+GCK++
Sbjct: 391 KTLYKYAILGCKVN 404
>03_06_0511 -
34425605-34425850,34426120-34426284,34426365-34426629,
34427805-34427884,34428051-34428149,34428387-34428644,
34429081-34429215
Length = 415
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +2
Query: 116 KTLYRGAIIGCKLS 157
KTLY+ AI+GCK++
Sbjct: 25 KTLYKYAILGCKVN 38
>03_02_0352 + 7749902-7751788,7752547-7752615
Length = 651
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 52 IPLSCAPWWCHPDTNISSERP 114
+P S P + HPD N+SS P
Sbjct: 19 LPSSSFPKFPHPDPNLSSPNP 39
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 89 SG*HHHGAQLRGILPSGSILSSHHMNT 9
+G H G+Q+ G+ PSGS S+ +NT
Sbjct: 2576 AGSQHAGSQISGVNPSGSSASA-SLNT 2601
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,875,630
Number of Sequences: 37544
Number of extensions: 155977
Number of successful extensions: 394
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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