Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_L06
(247 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 29 0.33
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ... 29 0.33
Z68493-9|CAA92796.1| 338|Caenorhabditis elegans Hypothetical pr... 28 1.0
Z68493-6|CAA92792.1| 335|Caenorhabditis elegans Hypothetical pr... 28 1.0
AL110477-12|CAB54335.1| 348|Caenorhabditis elegans Hypothetical... 28 1.0
AL034364-2|CAA22252.1| 630|Caenorhabditis elegans Hypothetical ... 27 1.3
Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical p... 27 1.8
Z32683-12|CAA83624.2| 186|Caenorhabditis elegans Hypothetical p... 27 1.8
DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagella... 27 1.8
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 26 3.1
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 26 3.1
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 26 3.1
AL033508-1|CAA22058.2| 821|Caenorhabditis elegans Hypothetical ... 26 3.1
U80843-18|AAN63439.1| 289|Caenorhabditis elegans Hypothetical p... 25 7.1
U80843-17|AAK71358.1| 444|Caenorhabditis elegans Hypothetical p... 25 7.1
Z81071-6|CAB03010.1| 464|Caenorhabditis elegans Hypothetical pr... 25 9.4
U13875-13|AAA21156.2| 470|Caenorhabditis elegans Hypothetical p... 25 9.4
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 29.5 bits (63), Expect = 0.33
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -2
Query: 162 IVDSLHPMIAPRYS---VLWAFRGYICVRMTPPWGTTKRNFTFRVHIKLPPHEY 10
+V+S HP S +L+ YICVR +P T + + +++K+ H Y
Sbjct: 1766 VVESQHPYKPNTSSSMVLLFEEADYICVRFSPDCQTAQFDDQLTIYLKIDEHSY 1819
>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
protein F07B7.12 protein.
Length = 1900
Score = 29.5 bits (63), Expect = 0.33
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -2
Query: 162 IVDSLHPMIAPRYS---VLWAFRGYICVRMTPPWGTTKRNFTFRVHIKLPPHEY 10
+V+S HP S +L+ YICVR +P T + + +++K+ H Y
Sbjct: 1702 VVESQHPYKPNTSSSMVLLFEEADYICVRFSPDCQTAQFDDQLTIYLKIDEHSY 1755
>Z68493-9|CAA92796.1| 338|Caenorhabditis elegans Hypothetical
protein C33A12.13 protein.
Length = 338
Score = 27.9 bits (59), Expect = 1.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +2
Query: 98 YPLNAHKTLYRGAIIGCKLSTIYL 169
YP A T Y GAI G + ST YL
Sbjct: 189 YPFGAIWTYYSGAIFGFRNSTFYL 212
>Z68493-6|CAA92792.1| 335|Caenorhabditis elegans Hypothetical
protein C33A12.8 protein.
Length = 335
Score = 27.9 bits (59), Expect = 1.0
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +2
Query: 20 GGSLIWTLKVKF-LLVVPHGGVI--LTQIYPLNAHKTLYRGAIIGCKLSTIYL 169
G LIW + F ++P GV L+ YPL A Y A G + S +YL
Sbjct: 159 GVPLIWIYPLFFTFFLIPAVGVCRQLSSPYPLGAVHIYYANAAFGMRNSYLYL 211
>AL110477-12|CAB54335.1| 348|Caenorhabditis elegans Hypothetical
protein Y113G7B.17 protein.
Length = 348
Score = 27.9 bits (59), Expect = 1.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 139 HWMQAVYYLPQEVTVHKG 192
HW Q V+YL +TV KG
Sbjct: 288 HWKQTVFYLKDALTVKKG 305
>AL034364-2|CAA22252.1| 630|Caenorhabditis elegans Hypothetical
protein W06D4.4 protein.
Length = 630
Score = 27.5 bits (58), Expect = 1.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +1
Query: 10 VFMWWELNMDPEGKIPLSCAPWW 78
+ MWW+++MD G + P W
Sbjct: 267 LLMWWDIDMDRNGTTFIDMGPKW 289
>Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical
protein F23B2.4 protein.
Length = 1192
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 121 TIPWRDHWMQAVYYLPQEVTVHKGNVASLISC 216
T+ DHW+ +V P TV G V I+C
Sbjct: 274 TVAQMDHWIWSVTVRPNSQTVAMGCVDGTIAC 305
>Z32683-12|CAA83624.2| 186|Caenorhabditis elegans Hypothetical
protein R07E5.4 protein.
Length = 186
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 123 YTVARSLDASCLLSTSRSDSTQRQCCFINLMPRRILPLV 239
Y R+ +C+ + D + Q C I+ PRR L LV
Sbjct: 65 YDYNRNFHCTCMHGATECDLNRLQNCAISYFPRRHLGLV 103
>DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagellar
transport protein protein.
Length = 1192
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 121 TIPWRDHWMQAVYYLPQEVTVHKGNVASLISC 216
T+ DHW+ +V P TV G V I+C
Sbjct: 274 TVAQMDHWIWSVTVRPNSQTVAMGCVDGTIAC 305
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 26.2 bits (55), Expect = 3.1
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +1
Query: 55 PLSCAPWWCHPDTNISSERPQDTIPWRDHWMQAVYYLPQEVTVHKGNVASLI 210
P+S A W+C+ + E+ T+ + ++ V +LPQ +KGN LI
Sbjct: 8772 PISDAKWFCNGMVLLPDEQVNMTVTGCEAVLRLVKFLPQ----NKGNYHVLI 8819
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 26.2 bits (55), Expect = 3.1
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +1
Query: 55 PLSCAPWWCHPDTNISSERPQDTIPWRDHWMQAVYYLPQEVTVHKGNVASLI 210
P+S A W+C+ + E+ T+ + ++ V +LPQ +KGN LI
Sbjct: 8792 PISDAKWFCNGMVLLPDEQVNMTVTGCEAVLRLVKFLPQ----NKGNYHVLI 8839
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 26.2 bits (55), Expect = 3.1
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +1
Query: 55 PLSCAPWWCHPDTNISSERPQDTIPWRDHWMQAVYYLPQEVTVHKGNVASLI 210
P+S A W+C+ + E+ T+ + ++ V +LPQ +KGN LI
Sbjct: 8792 PISDAKWFCNGMVLLPDEQVNMTVTGCEAVLRLVKFLPQ----NKGNYHVLI 8839
>AL033508-1|CAA22058.2| 821|Caenorhabditis elegans Hypothetical
protein Y106G6G.2 protein.
Length = 821
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 138 SLDASCLLSTSRSDSTQRQCCFINLMPRRILPLVL 242
SLDA C L T+ + F+NL+ ++ PL++
Sbjct: 211 SLDAICALLTTSNLKILSHQPFVNLLWEKVCPLII 245
>U80843-18|AAN63439.1| 289|Caenorhabditis elegans Hypothetical
protein C32B5.1b protein.
Length = 289
Score = 25.0 bits (52), Expect = 7.1
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +1
Query: 49 KIPLSCAPWW-CHPDTNISSERPQDTIPW----RDHWMQAVYYLPQEVTVHKGNVASLIS 213
K+P P+ C P T I E D+I W +D +AV YL + V ++ N+ +S
Sbjct: 66 KLPHQLRPFTNCSPGTYIGFENDTDSIEWATSSKDR-KEAVAYLYERVLGNR-NIPIKVS 123
Query: 214 CQDEYSLWFYL 246
D S YL
Sbjct: 124 KLDINSNTVYL 134
>U80843-17|AAK71358.1| 444|Caenorhabditis elegans Hypothetical
protein C32B5.1a protein.
Length = 444
Score = 25.0 bits (52), Expect = 7.1
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +1
Query: 49 KIPLSCAPWW-CHPDTNISSERPQDTIPW----RDHWMQAVYYLPQEVTVHKGNVASLIS 213
K+P P+ C P T I E D+I W +D +AV YL + V ++ N+ +S
Sbjct: 182 KLPHQLRPFTNCSPGTYIGFENDTDSIEWATSSKDR-KEAVAYLYERVLGNR-NIPIKVS 239
Query: 214 CQDEYSLWFYL 246
D S YL
Sbjct: 240 KLDINSNTVYL 250
>Z81071-6|CAB03010.1| 464|Caenorhabditis elegans Hypothetical
protein F28F8.7 protein.
Length = 464
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +1
Query: 76 WCHPDT--NISSERPQDTIPWRDHWMQAVYYLPQEVTV 183
WC PD N+ + ++ WR W Q ++P EV +
Sbjct: 161 WCPPDDDQNLDYDLLKNAY-WRAIWRQFENHIPMEVAL 197
>U13875-13|AAA21156.2| 470|Caenorhabditis elegans Hypothetical
protein C26E6.2 protein.
Length = 470
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 70 PWWCHPDTNISSERPQDTIPWRDHWMQAVYYLPQEV 177
P +CHP +I+ Q + H QA+ PQ++
Sbjct: 224 PNYCHPVKSINRSYMQRKLSRASHVSQALPIAPQQI 259
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,502,877
Number of Sequences: 27780
Number of extensions: 126881
Number of successful extensions: 253
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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