Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L06
         (247 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   0.24 
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    23   0.56 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   3.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    20   3.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   3.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    19   6.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   6.9  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    19   9.1  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 0.24
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 58  LSCAPWWCHPDTNISSERPQDTIPWRDHWM-QAVYYLPQEVTVHKGNVASLISCQDEYSL 234
           +SC+P   HP+T I   R + ++    + + ++V Y    +TV   +  S +  Q +  +
Sbjct: 362 VSCSPQTVHPETIIDVSRRRSSLICDVYGVNESVSYERGSMTVSVTSKPSTMERQTQTEV 421

Query: 235 W 237
           W
Sbjct: 422 W 422


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 23.0 bits (47), Expect = 0.56
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 156 DSLHPMIAPRYSVLWAFRGYICVRMTPPWGTTK 58
           D  HP+ AP + V+ A    I   +   +GT K
Sbjct: 3   DEDHPIYAPFFGVMGAASAIIFSALGAAYGTAK 35


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 52  IPLSCAPWWCHPDTNISSERPQDTIP 129
           +PL   P  CH   +   E P  T+P
Sbjct: 651 MPLLPRPISCHTTPDSFIEAPNKTLP 676



 Score = 19.4 bits (38), Expect = 6.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 81  TPPWGTTKRNFTFRVHIKLPP 19
           +PP  TTKR+ T     +LPP
Sbjct: 620 SPPV-TTKRDGTQETEERLPP 639


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 123 SVLWAFRGYICVRMTPP 73
           SV W ++G +   + PP
Sbjct: 191 SVWWDYKGIVYFELLPP 207


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 117 RHYTVARSLDASCLLSTSRS 176
           R +TVA S DAS   S S S
Sbjct: 35  RDFTVAESYDASSSNSDSLS 54


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +2

Query: 47  VKFLLVVPHGGVILTQIYPLNAHKTLYRGAIIGCKLSTIYLK 172
           VK  LV P G      I  L    +L    ++G K    +LK
Sbjct: 81  VKAGLVQPQGTTFSNSISQLRKEVSLLYRILLGAKDYQTFLK 122


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 7/29 (24%), Positives = 13/29 (44%)
 Frame = +1

Query: 7   GVFMWWELNMDPEGKIPLSCAPWWCHPDT 93
           GV+ W     D + ++   C  +  H D+
Sbjct: 481 GVYAWIGAGRDSDSRLLDLCTKFLMHKDS 509


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 19.0 bits (37), Expect = 9.1
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +1

Query: 22  WELNMDPEGKIPLSCAPWWCHPDTNISSERPQDTIP 129
           W L+      I L C+P     D N S    Q  IP
Sbjct: 140 WVLDSGLINNIQLMCSPKLLAFDLNTSKLLKQIEIP 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,881
Number of Sequences: 438
Number of extensions: 1585
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4275738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)