Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L05
         (414 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   156   8e-39
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...   153   4e-38
03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570...    29   1.9  
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773...    28   3.4  
05_01_0479 - 3920992-3921513,3921643-3921756,3921905-3922482,392...    27   4.5  
02_02_0343 + 9163976-9165220                                           27   5.9  
04_04_1631 - 34919197-34919205,34919865-34920204,34920418-349207...    27   7.8  

>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score =  156 bits (378), Expect = 8e-39
 Identities = 71/101 (70%), Positives = 82/101 (81%)
 Frame = +3

Query: 69  GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 248
           GFVK  K   YFKR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 249 CQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTG 371
            Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAYCTG
Sbjct: 60  AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTG 100


>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score =  153 bits (372), Expect = 4e-38
 Identities = 70/101 (69%), Positives = 81/101 (80%)
 Frame = +3

Query: 69  GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 248
           GFVK  K   Y KR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 249 CQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTG 371
            Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAYCTG
Sbjct: 60  AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTG 100


>03_02_0719 +
           10654842-10654977,10655039-10655124,10655226-10657001,
           10657782-10657926,10658017-10658735
          Length = 953

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +1

Query: 343 LTMLLPTAL-VCCWQEDCCRGSA 408
           L++L PT L   CW  DCC GS+
Sbjct: 691 LSVLEPTFLNESCWSSDCCSGSS 713


>08_02_1410 -
           26876243-26876497,26877129-26877239,26877240-26877324,
           26877620-26877672,26878318-26878440,26878514-26878597,
           26878708-26878773,26879512-26879584,26879854-26879888,
           26879970-26880212
          Length = 375

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 192 KYNTPKYRLIVRLSNKDVTCQVAYSRI--EGDHIVCAAYSHEL 314
           +YNT +YR +  +S K V C+ +   +  E DH+   A S  L
Sbjct: 274 RYNTSRYRELPHISIKCVFCKASVEPMGEESDHVHIIALSDAL 316


>05_01_0479 -
           3920992-3921513,3921643-3921756,3921905-3922482,
           3922709-3923067,3923132-3923205
          Length = 548

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = -2

Query: 398 LQQSSCQQQTSAVGSSIVSQTHLDTIAWEFMRVGSTDNVITLN---A*VCNLTGNIFIG* 228
           LQ +  Q + S  G+ ++S     +I W    V  T +  T+N   + V +  GN+ IG 
Sbjct: 32  LQLNLTQLKLSRDGNLVISNNATGSILWSTDIVNRTSSATTMNNTASVVLSNDGNLVIG- 90

Query: 227 PYNQSVLW 204
             + +VLW
Sbjct: 91  -SSSNVLW 97


>02_02_0343 + 9163976-9165220
          Length = 414

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 374 QTSAVGSSIVSQTHLDTIAWEFMRVGSTDNVITLN 270
           Q+ A+ S++ S THL  +  E + V   D +ITLN
Sbjct: 209 QSMALLSNLTSLTHLTLLECEDLTVDGFDPLITLN 243


>04_04_1631 -
           34919197-34919205,34919865-34920204,34920418-34920726,
           34920781-34921307,34921700-34921852,34922102-34922186,
           34922360-34922364
          Length = 475

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 384 LPATDQCSRQQHS*SNPP-*YHSVGVHESRQHR 289
           L +T  CSR++    NPP   H    HE ++HR
Sbjct: 69  LSSTASCSRKEAKVDNPPHGQHDNVTHEQQRHR 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,223,608
Number of Sequences: 37544
Number of extensions: 211682
Number of successful extensions: 471
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)