Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L04
         (387 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   199   1e-52
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   199   1e-52
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    42   4e-05
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    28   0.59 
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    26   1.8  
SPCC4G3.06c |mrpl4||mitochondrial ribosomal protein subunit L4|S...    25   4.1  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   5.5  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    25   5.5  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    24   7.2  
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch...    24   9.6  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  199 bits (485), Expect = 1e-52
 Identities = 89/118 (75%), Positives = 103/118 (87%)
 Frame = +1

Query: 34  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGFEAK 213
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+G EAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 214 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGV 387
           QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGV
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGV 118


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  199 bits (485), Expect = 1e-52
 Identities = 89/118 (75%), Positives = 103/118 (87%)
 Frame = +1

Query: 34  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGFEAK 213
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+G EAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 214 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGV 387
           QPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGV
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGV 118


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 41.5 bits (93), Expect = 4e-05
 Identities = 28/76 (36%), Positives = 43/76 (56%)
 Frame = +1

Query: 160 GASHAKGIVLEKVGFEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 339
           G+   +G+       + K+PNSA+RK  RV+L   G+ VTA++P  G  ++ +E+  VL+
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103

Query: 340 AGFGRKGHAVGDIPGV 387
            G GR      D PGV
Sbjct: 104 RG-GR----AQDCPGV 114


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = -1

Query: 210 GFKANFFEDDALSMRCTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPRFTHY 31
           GFK +++ +     R   E +RLP     G  + +V    L T +  L++    P + H 
Sbjct: 350 GFKPSYYTNLNRIARYPIENIRLPITLVYGSNDNMVDIETLKTQLPPLSQCIQIPNYEHL 409

Query: 30  D 28
           D
Sbjct: 410 D 410


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 103 DKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGF 204
           D+EF+   +   +K  PF    HA  +V+  V F
Sbjct: 143 DREFRIGRLKFNFKPGPFNVKEHALIVVMSSVSF 176


>SPCC4G3.06c |mrpl4||mitochondrial ribosomal protein subunit
          L4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 144

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 62 AVRIPRGLPITIARTRSAPR 3
          AVRIP+G    + + +SAP+
Sbjct: 12 AVRIPKGFVFPVPKVKSAPK 31


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 320 SSMWLRQPSRGTNAVTFLPFLMSCTRTHLRMAEFGCLASKPTFS 189
           S + LRQ  RG   + +LP L+S  +T L       L+ + T S
Sbjct: 299 SVLRLRQYLRGNACIDYLPELLSVLKTLLPGILLALLSLRTTLS 342


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 289 PRDGCLNHIEENDEVLVAGFGRKGHAVG 372
           PR+  +++ + ND + + G+G +GH  G
Sbjct: 74  PREKLVDYFK-NDTLAIIGYGSQGHGQG 100


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1

Query: 97  WADKEFKKAHMGTRWKANPFGGASHAKGIV 186
           W D EF   H   ++   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 257

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 201 ANFFEDDALSMRCTTEGVRLPSRT 130
           +++FE + + + CT  G R PS+T
Sbjct: 51  SSYFESEKIKIACTVSGPR-PSKT 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,715,947
Number of Sequences: 5004
Number of extensions: 34798
Number of successful extensions: 86
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)