Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_L04
(387 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 202 8e-53
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 201 2e-52
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 150 3e-37
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 41 3e-04
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 31 0.42
11_04_0425 - 17522818-17522822,17522860-17522971,17523267-17523584 29 1.3
02_02_0401 + 9847398-9847463,9848916-9849019,9849873-9849876,984... 29 1.7
06_02_0197 - 12912818-12913411,12913505-12913732 28 2.2
06_03_0416 + 20568087-20568702,20568767-20570313 28 3.0
04_03_1015 - 21734381-21736534 27 5.2
06_03_1146 - 28004896-28005554,28005664-28005844 27 6.9
04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900... 27 6.9
03_06_0741 + 35893538-35895600,35896274-35896474,35896701-358968... 27 6.9
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92... 27 6.9
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 27 6.9
05_05_0368 + 24449793-24451199,24451867-24451927,24452256-24452710 26 9.1
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 202 bits (493), Expect = 8e-53
Identities = 91/124 (73%), Positives = 102/124 (82%)
Frame = +1
Query: 16 RVRAIVMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEK 195
R ++ MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK
Sbjct: 165 RCPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEK 223
Query: 196 VGFEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGD 375
+G EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGD
Sbjct: 224 IGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGD 283
Query: 376 IPGV 387
IPGV
Sbjct: 284 IPGV 287
Score = 201 bits (490), Expect = 2e-52
Identities = 90/118 (76%), Positives = 99/118 (83%)
Frame = +1
Query: 34 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGFEAK 213
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 214 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGV 387
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGV
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGV 117
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 201 bits (490), Expect = 2e-52
Identities = 90/118 (76%), Positives = 99/118 (83%)
Frame = +1
Query: 34 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGFEAK 213
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 214 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGV 387
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGV
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGV 117
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 150 bits (364), Expect = 3e-37
Identities = 72/112 (64%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
Frame = +1
Query: 13 DRVRAIVMG-KPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVL 189
+RVRA G K G+ RK HRR QRWADK +KK+H G WK PF G+SHAKGIVL
Sbjct: 64 ERVRAWSCGAKTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVL 122
Query: 190 EKVGFEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 345
EK+G EAKQPNSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 123 EKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 41.1 bits (92), Expect = 3e-04
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +1
Query: 325 DEVLVAGFGRKGHAVGDIPGV 387
DEVL++GFG KGHAVGDI GV
Sbjct: 67 DEVLISGFGHKGHAVGDIRGV 87
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 30.7 bits (66), Expect = 0.42
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 12 RSCSRYRNG*TSGYSHGAQARESSSRAAMGRQGIQKSP 125
R+C R +G +GY HG + + SSR + R G+ +P
Sbjct: 184 RACYRV-HGMATGYCHGCRCQRCSSRPSRDRDGVAWAP 220
>11_04_0425 - 17522818-17522822,17522860-17522971,17523267-17523584
Length = 144
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = +1
Query: 1 ARGADRVRAIVMGKPRGIRTARKHVNHRR 87
A GADR R +V G PR R AR+H RR
Sbjct: 45 AAGADRRRPVV-GDPRRRRAARQHGEDRR 72
>02_02_0401 +
9847398-9847463,9848916-9849019,9849873-9849876,
9849968-9851230
Length = 478
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 3 TRSRSCSRYRNG*TSGYSHGAQARESSSRAAMGRQG 110
++ R+ S+Y+ G +S Y GA ++ ++ +QG
Sbjct: 280 SKQRTSSKYKQGASSKYKQGASSKSKQGTSSKSKQG 315
>06_02_0197 - 12912818-12913411,12913505-12913732
Length = 273
Score = 28.3 bits (60), Expect = 2.2
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 250 VHEHTYEWLNSAAWLQSQLFRGRCP*HEMHHRR 152
V +H WL +A+ LQ ++FR H++HH+R
Sbjct: 186 VDDHCGLWLPAASPLQ-RVFRNNAAYHDVHHQR 217
>06_03_0416 + 20568087-20568702,20568767-20570313
Length = 720
Score = 27.9 bits (59), Expect = 3.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 247 HEHTYEWLNSAAWLQSQLF 191
H Y+W+N +AW+ S +F
Sbjct: 250 HMRLYQWINYSAWVPSDIF 268
>04_03_1015 - 21734381-21736534
Length = 717
Score = 27.1 bits (57), Expect = 5.2
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +1
Query: 166 SHAKGIVLEKVGFEAKQPN-----SAIRKCVRVQLIKNGKKVTAFVPRDG 300
S A + L ++ +EA PN SA+ C + L+ +GK++ A++ R+G
Sbjct: 470 SEAALLALSEMHYEAT-PNQSTFSSALAACANIFLLNHGKQIHAYMIRNG 518
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 386 TPGMSPTAWPLRPNPATNTSSFSS 315
TP SP+ P+ P PA TS+ SS
Sbjct: 184 TPSPSPSVSPMAPAPAPTTSTPSS 207
>04_02_0034 -
8999618-9000358,9001439-9001618,9001666-9003621,
9004647-9004786,9004871-9005282,9006399-9006638
Length = 1222
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 85 REQRWADKEFKKAHMGTRWKANPFGG 162
R +RW DK+ K R KA+PF G
Sbjct: 245 RTKRWHDKQIKIKKFKPRDKASPFCG 270
>03_06_0741 +
35893538-35895600,35896274-35896474,35896701-35896814,
35897570-35897649,35897772-35897896,35898008-35898079
Length = 884
Score = 26.6 bits (56), Expect = 6.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 101 PTRNSKKPTWVRDGRRTPSVVHL 169
PT+++ +PTWV + P+V+ L
Sbjct: 65 PTQHAPEPTWVNPSKPKPTVLSL 87
>02_01_0125 +
920128-920392,920491-921839,921921-922084,922340-922370,
922534-922565,922730-923060,923210-923713
Length = 891
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 140 HLVPMWAFLNSLSAHRCSRR*FTCLRAVRI 51
H+V WAFL + C F C+ V++
Sbjct: 577 HIVNSWAFLQPFTLQMCQVLQFACVNEVQL 606
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 159 TEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPRFTHY 31
T ++P H+ + +G S A ++ VLAR ANT + +
Sbjct: 183 TTATKVPGGWHIDGQKRWIGNSTFADVLVVLARNANTKQLNGF 225
>05_05_0368 + 24449793-24451199,24451867-24451927,24452256-24452710
Length = 640
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/37 (27%), Positives = 16/37 (43%)
Frame = +3
Query: 90 AAMGRQGIQKSPHGYEMEGEPLRWCISC*GHRPRKSW 200
A + + +++ G E GEP W + G P W
Sbjct: 290 APVSEEQLEELALGLEASGEPFLWAVRADGWSPPAGW 326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,145,342
Number of Sequences: 37544
Number of extensions: 268801
Number of successful extensions: 778
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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