Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L04
         (387 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   221   1e-58
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    51   3e-07
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   3.5  
Z49125-6|CAA88937.2|  776|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical ...    27   4.6  
Z81496-10|CAB04066.2|  324|Caenorhabditis elegans Hypothetical p...    26   8.1  
Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical pr...    26   8.1  
AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    26   8.1  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  221 bits (540), Expect = 1e-58
 Identities = 98/118 (83%), Positives = 108/118 (91%)
 Frame = +1

Query: 34  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGFEAK 213
           MGKP+G+ TARK   HR+EQRW DK +KKAH+GTRWK+NPFGGASHAKGIVLEK+G EAK
Sbjct: 1   MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAK 60

Query: 214 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGV 387
           QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN +EENDEVLV+GFGR GHAVGDIPGV
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGV 118


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 30/66 (45%), Positives = 43/66 (65%)
 Frame = +1

Query: 160 GASHAKGIVLEKVGFEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 339
           G SH KGIVL+ V    K+PNS  RKC  V+L   G +V A++P  G  ++++E+ +VLV
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLV 128

Query: 340 AGFGRK 357
            G GR+
Sbjct: 129 KG-GRR 133


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 277 TAFVPRDGCLNHIEEN 324
           T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668


>Z49125-6|CAA88937.2|  776|Caenorhabditis elegans Hypothetical
           protein C47G2.5a protein.
          Length = 776

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 177 GHRPRKSWL*SQAAEFSH 230
           GHRP  +W+   A +FSH
Sbjct: 676 GHRPENNWVDETAPDFSH 693


>AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical
           protein C49A9.6 protein.
          Length = 360

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
 Frame = +1

Query: 31  VMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFG--------GASHAKGIV 186
           V  K   +  + KH  H  +  + D  FKK   GTRW    +G        G  + +G +
Sbjct: 235 VDSKTESLFVSNKH--HLEQGHFFDGNFKKNADGTRWTCQNYGQPVEQLAEGGINQRGKI 292

Query: 187 LEKVGFEAKQPNSAIRK 237
              V  E  QP    RK
Sbjct: 293 FFTVKIENFQPARGNRK 309


>Z81496-10|CAB04066.2|  324|Caenorhabditis elegans Hypothetical
           protein F09C6.7 protein.
          Length = 324

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 356 LRPNPATNTSSFSSMWLRQPSRGTNAVTFLPFLMSCTRTHL 234
           L+P+ + NTSS +   LR   +G N    LP L     T L
Sbjct: 216 LKPHLSPNTSSATRAMLRTLIKGLNYQILLPLLSYIPNTSL 256


>Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical
           protein ZK1098.1 protein.
          Length = 724

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 6   RSRSCSRYRNG*TSGYSHGAQARESSSRAAMGRQGIQKSPHGYEMEGE 149
           R  + + Y+NG TSG + G++  E   +    ++  ++S +  E EGE
Sbjct: 622 RETAFNHYKNG-TSGTTAGSEILEKKKKKKDKKKKNKRSDNNSESEGE 668


>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 78  SSSRAAMGRQGIQKSPHGYEMEGEPLRWCI 167
           S SR+   R+   +SP   E   +P RWC+
Sbjct: 579 SRSRSPPRRRRRSRSPRRREEHTDPTRWCV 608


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,815,535
Number of Sequences: 27780
Number of extensions: 209510
Number of successful extensions: 580
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)