Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L03
         (175 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    23   4.1  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    23   4.1  
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    23   7.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        22   9.4  

>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 3   LQEFGSRKTRTRILHAIFYIHL 68
           L E  +RK   +I+HAI Y HL
Sbjct: 117 LDECTTRKIFRQIVHAIDYCHL 138


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 56  LYPSSXXXXXXXXXNPVIMASAVIKFSAIIL 148
           LY            NP I ++AVI+FS+I L
Sbjct: 545 LYDRFDAKDTNSVLNPCIPSNAVIEFSSIYL 575


>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 172 ISKTHADNQNYGTELNHGGRHYDGIKKYLK 83
           I K H+  Q    + +   RH+DG+K  LK
Sbjct: 192 IQKVHSSFQVLSLKNDSLRRHFDGLKYDLK 221


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 3    LQEFGSRKTRTRILHAIFYIHLQLLFYFKYFL 98
            L  F       RI H I  + L +  YF+ FL
Sbjct: 3299 LLSFSQHAASLRICHGIDAMLLNIYHYFEQFL 3330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 723,009
Number of Sequences: 5004
Number of extensions: 10764
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 38
effective length of database: 2,172,326
effective search space used: 41274194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)