Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L03
         (175 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0037 - 12613686-12614318,12614792-12614878,12614985-126151...    27   1.6  
06_03_0931 - 26052135-26052176,26052273-26052377,26052489-260525...    26   3.7  

>12_02_0037 -
           12613686-12614318,12614792-12614878,12614985-12615176,
           12617246-12617371,12617479-12617565,12617994-12618458,
           12618868-12618947,12619739-12619751
          Length = 560

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2

Query: 129 LITADAIMTGLKNI*NKIIIEDGYKKW 49
           LI A+A ++GL+ +  ++ +E GY KW
Sbjct: 494 LIEANATISGLQVLKERLQVEMGYSKW 520


>06_03_0931 -
           26052135-26052176,26052273-26052377,26052489-26052584,
           26052686-26052757,26052879-26052974,26053054-26053155,
           26053258-26053347,26053452-26053535,26053623-26053697,
           26053847-26053930,26054012-26054242
          Length = 358

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 54  FYIHLQLLFYFKYFLIP 104
           FY+ +  LFY +YFLIP
Sbjct: 339 FYMFIWKLFYAEYFLIP 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,509,679
Number of Sequences: 37544
Number of extensions: 63952
Number of successful extensions: 109
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 14,793,348
effective HSP length: 37
effective length of database: 13,404,220
effective search space used: 268084400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)