Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L03
         (175 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X96667-1|CAA65447.1|  350|Homo sapiens beta-galactoside alpha-2,...    28   6.2  
U63090-1|AAB40389.1|  350|Homo sapiens Gal beta-1,3 GalNAc alpha...    28   6.2  
BC036777-1|AAH36777.1|  350|Homo sapiens ST3 beta-galactoside al...    28   6.2  

>X96667-1|CAA65447.1|  350|Homo sapiens beta-galactoside
           alpha-2,3-sialyltransferase protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 2   AAGIRFEENAHAHTTRHFLYPSS 70
           A  + FE++  + TT HF+YP S
Sbjct: 182 APTVGFEQDVGSRTTHHFMYPES 204


>U63090-1|AAB40389.1|  350|Homo sapiens Gal beta-1,3 GalNAc
           alpha-2,3 sialyltransferase protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 2   AAGIRFEENAHAHTTRHFLYPSS 70
           A  + FE++  + TT HF+YP S
Sbjct: 182 APTVGFEQDVGSRTTHHFMYPES 204


>BC036777-1|AAH36777.1|  350|Homo sapiens ST3 beta-galactoside
           alpha-2,3-sialyltransferase 2 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 2   AAGIRFEENAHAHTTRHFLYPSS 70
           A  + FE++  + TT HF+YP S
Sbjct: 182 APTVGFEQDVGSRTTHHFMYPES 204


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,858,707
Number of Sequences: 237096
Number of extensions: 342404
Number of successful extensions: 438
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 76,859,062
effective HSP length: 37
effective length of database: 68,086,510
effective search space used: 1361730200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)