Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L02
         (178 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   2.3  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    23   4.1  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    23   4.1  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    23   5.4  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    23   5.4  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    23   7.1  

>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 287

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 125 PMLNTATMKLGAYDKKVASMSYN*K 51
           P+L   T KL A  KKV  +SY  K
Sbjct: 253 PILLAVTAKLSALQKKVNDVSYRFK 277


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 119 LNTATMKLGAYDKKVASMSYN*KQYELF 36
           + +ATM  G+  KKVA +S N ++  +F
Sbjct: 601 IKSATMIKGSTSKKVAVVSENNRRLSIF 628


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 10 RRKKIHVFGNNSYC 51
          RR+KIHV  NN+ C
Sbjct: 35 RREKIHVKENNALC 48


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 46  MNYSQKHESFFACAE 2
           M Y   H  FFAC+E
Sbjct: 326 MGYGGPHAGFFACSE 340


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 99  FHGGSI*HREMSSSNTLQKAIDLVT 173
           ++GG + + E S +N L+K ID+++
Sbjct: 525 YNGGVMDNDEESITNKLKKVIDIIS 549


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 144 YLMNSFPYVKYCH 106
           Y +N FP +K CH
Sbjct: 19  YTINGFPLMKRCH 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 755,048
Number of Sequences: 5004
Number of extensions: 11436
Number of successful extensions: 25
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 39
effective length of database: 2,167,322
effective search space used: 41179118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)