Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L02
         (178 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   0.34 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   0.34 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      19   7.3  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    18   9.6  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    18   9.6  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                18   9.6  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 0.34
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 23  FMFLGIIHIVFSYNSY*QPSYHTLLISWWQYLT 121
           + FL  ++++F  +S    S HTL ++W + +T
Sbjct: 479 YSFLERLNLIFMSSSLQWSSTHTLDVAWRRKVT 511


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 0.34
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 23  FMFLGIIHIVFSYNSY*QPSYHTLLISWWQYLT 121
           + FL  ++++F  +S    S HTL ++W + +T
Sbjct: 517 YSFLERLNLIFMSSSLQWSSTHTLDVAWRRKVT 549


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 145 PCKKPLILSQ 174
           PCK P+I+ Q
Sbjct: 65  PCKHPVIVLQ 74


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/16 (31%), Positives = 10/16 (62%)
 Frame = -1

Query: 64  VITKNNMNYSQKHESF 17
           +I+ NN NY   + ++
Sbjct: 303 IISSNNYNYKNYNNNY 318


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/16 (31%), Positives = 10/16 (62%)
 Frame = -1

Query: 64  VITKNNMNYSQKHESF 17
           +I+ NN NY   + ++
Sbjct: 314 IISSNNYNYKNYNNNY 329


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 52  NNMNYSQKHESF 17
           +NM  S+KH SF
Sbjct: 102 SNMLNSEKHASF 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,124
Number of Sequences: 438
Number of extensions: 860
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 38
effective length of database: 129,699
effective search space used:  2593980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)