Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L01
         (288 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    26   1.2  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    25   2.9  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   2.9  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    25   2.9  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    24   3.8  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    24   3.8  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    24   5.0  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    24   5.0  
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    24   5.0  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    23   6.7  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    23   6.7  
SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|c...    23   8.8  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    23   8.8  

>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +2

Query: 11  VLGIVKDCVDDDVYMCLKEKVL 76
           V+  VK+ +DDD+Y  LKEK+L
Sbjct: 107 VVNCVKE-IDDDLYNTLKEKLL 127


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 252 SKKSAAESTNLDSTCASIAFGSSDSGSKARA 160
           +K + ++ +NL++  A + FG   + S ARA
Sbjct: 329 AKSTKSDDSNLNANFARLGFGQFAAASNARA 359


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 15   WALLRTVSTMTCICASRRRF 74
            W L +TV +M CI A +R F
Sbjct: 1702 WCLAKTVLSMLCIIAIQRFF 1721


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +2

Query: 131 TLESKGSPRSARALEPLSDEPKAIEAQVESRLV 229
           TLES+ +  +++  + +S EP  + A VE+ ++
Sbjct: 276 TLESRTASIASKNKKDMSSEPTVVAAMVENYMI 308


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 205 LYRFRLIGQRLQSTCGPWRTFALQGDTINQSYL 107
           LY+ R++G++  S    W T   +  T++ S +
Sbjct: 547 LYKLRVMGEKCNSVRYLWNTIDTEFSTVSHSLI 579


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 122 DGVTLESKGSPRSARALEPLSDEPKAIEAQVESR 223
           D V+  S+ + +S   + P+SD+PK   ++ E+R
Sbjct: 167 DVVSPSSELNAQSVNNILPISDDPKDSTSEAETR 200


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 127 TINQSYLPLRPQSLCIFQNLLLEAHIHVIVDTVLNNAQN 11
           T+N S+  ++  +L +F + + + HI     T+LN   N
Sbjct: 383 TLNASFSTIQFVALGVFHSKISDPHIGGTYMTILNTLSN 421


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 13/61 (21%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
 Frame = -1

Query: 240 AAESTNLDSTCASI-------AFGSSDSGSKARADLGEPLLSKVTPSIRVISLFDLKVSA 82
           A+ S+  DSTC  +       +  +S   ++ ++++ +PLL  +TP+    S   + +++
Sbjct: 117 ASLSSLCDSTCGDVDDEQQFNSLATSPLSTETQSEVSDPLLDTLTPNSLESSFASISLNS 176

Query: 81  Y 79
           +
Sbjct: 177 F 177


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 191 PKAIEAQVESRLVDSAADFLENYVIQF 271
           P+A+   +E  L D   D+L+ Y+I +
Sbjct: 93  PEAVPKALEKTLKDLKLDYLDEYLIHW 119


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 10/37 (27%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 5   EGVLGIVKDCVDDDVYMCLKEKVLKY-AETLRSKREI 112
           E  +GI+K+  DD + +   +++L++  +T R K ++
Sbjct: 191 ESPMGILKNIQDDSMTIVTNKRILRFEPKTSRGKDQL 227


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 189 SSDSGSKARADLGEPLLSKVTPSIRVISLFDLKVS 85
           + D+       LGE LL     SIR I+L D K S
Sbjct: 679 AKDAAMGPLRSLGESLLFTKMESIRPINLDDFKTS 713


>SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
 Frame = -3

Query: 184 GQRLQSTCGPWRTFALQGDTIN----QSYLPLRP 95
           G  L+  C PWR F  +G  +     +S  P RP
Sbjct: 52  GFMLEQVCLPWRYFTDRGFVVEFVIAESIFPPRP 85


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 62  KEKVLKYAETLRSKREITLIDGVTLESK 145
           K  VLKY ET+  K  I  ++ + L++K
Sbjct: 625 KGVVLKYLETISYKVSIIYLEKLLLDNK 652


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,132,584
Number of Sequences: 5004
Number of extensions: 19285
Number of successful extensions: 96
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)